Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90641g00026 ATGGAGTACGGTAGCGGAGGGAGTGGTGGGTCCCCTGGGGAGCACCACCATCACCACCACAACCACAACGACGCTTCTTCTTCTGAGCGGAGGAAGAAGCGCTACCACCGTCATACTGCTAATCAGATTCAACGGCTTGAAACGGTGTTCAAGGAGTGTAATCACCCAGATGAGAAGCAGAGATTGCAGTTAAGCAGAGAATTAGGCTTGGCTCCAAGGCAGATCAAATTTTGGTTCCAGAACAGAAGGACTCAGATGAAGGCTCAGGGAGAGAGAGCGGATAACTGTGCACTGAGGGCAGAGAATGATAAGATACGTTGCGAGAACATAGTCATAAGGGAGGCCCTCAAGAACGTTATCTGTCCCTCTTGTGGTGGTGGCCCCTCCCTCAACGACGATTCCTATTTCGATGAACAAAAATTGAGACTTGAAAATGCTCAACTCAAGGAGGAGCTTGATAGAGTGTCTAGCATTGCGGCTAAGTACATTGGAAGGCCAATTTCACAGCTGCCACCGGTTCAGCCAATTCACATATCCTCCCTTGATTTGACCATGTCCAGTTTCGGAGGCCACGGCGGGTACGGCGGCGGCCCCTCCCTCGACCTTGACCTCCTCCCCGGGAGTTCTTCCTCGGTTATGCCGCCGCACGTGCCATACCAGCCGGCTTGTCTCTCGGACATGGACAAGTCTCTAATGTCAGGCATTGCTTCTAATGCCATGGAGGAATTAATGAGCCTCTTGCAGACTAATGAGCCGTTGTGGATGAAGTCAAGCGCGGATGGGAGAGATGTTCTTAATCTTGATACATATGATAAGATGTTTCCGAAGGCTAATAGTCACTTGAAGAACCCCAATGTTAGGATTGAAGCTTCTAGAGATTCTGGTGTCGTTATCATGAATGGCCTAACTCTGGTTGACATGTTCATGGACCCAAGCAAGTGGATGGAGCTGTTTCCCACAATTGTAACGGCTGCAAGAACAATTGAAGTTATATCTACTGGGATGATGGGTGGTCACAGTGGTTCTTTACAACTGATGTATGAAGAGTTGCAAGTGCTGTCTCCACTTGTTTCAACAAGAGAATTCTACTTCCTCCGTTATTGTCAGCAAATTGAGCAAGGTCTATGGGCAATAGTAGATGTTTCCTATGATTTCCCCCAAGACAATCACTTTGCTGCGCCGTTCCGATCTCATCGCCTTCCTTCCGGTTGCTTCATACAGGACATGCCTAATGGATACTCCAAGGTTACTTGGGTTGAACATGTGGAGGTAGAAGATAAAACTCCGGTTCATCGCCTTCACCGGAATCTTGTTTATAATGGAATGGCATTTGGAGCTCAGAGATGGCTTGCTGTGCTGCAGAGGATGTGTGAAAGATTGGCTTGTTTAATGGTCACAGGAAATTCCACCAGGGACCTTGGAGGAGTAATTCCTTCTCCAGAGGGGAAGAGGAGCATGATGAGGCTTGCACAAAGAATGGTCACCAATTTTTGCGCCAGCATTGGCACGTCGGCCGGCCACCGGTGGACAACGCTGTCCGGGATGAACGAGATTGGTGTGAAGGTCACTGTCCACAAGAGCACAGACCCCGGGCAACCTAGTGGCGTGGTGCTGAGCGCCGCCACCACCATTTGGCTCCCTCTCCCTCCACAAACCGTCTTCAATTTCTTCAAGGATGAAAGAAAAAGACCTCAGTGGGATGTTCTTTCCAATGGGAATGTGCAAGAAGTGGCTCATATAGCAAATGGTTCTCACCCTGGTAACTGTATATCTGTCCTTCGGGCATACAACACAAGCCAGAATAACACACTGATACTACAAGAGAGCTGCATTGATCCATCTGGCTCCATTGTAGTATACTGTCCGGTTGAGCTTCCGTCGATCAACATAGCGATGAGCGGCGAGGATCCGTCGTATATCCCACTAGTACCATCCGGTTTCACGATCACCCCGGACGGAAACCACCACGAGCACCAAGGAGGCGGCGGTGATGGTGCATCCACAAGCTCAACCCCAAGCAGAAGCAGCAGCACTATGGTGGGAATGAGATCCGGAGGGTCACTGGTGACAGTTGCATTCCAAATACTAGTGAGTAGCTTGCCATCTGCAAAGCTCAACATGGAGTCAGTAGCAACTGTTAATAACCTCATCAGCACCACTGTTCAGCAAATTAAAGCTGCTTTGAATTGTCCTACTTCCTGA 2202 0.4932 MEYGSGGSGGSPGEHHHHHHNHNDASSSERRKKRYHRHTANQIQRLETVFKECNHPDEKQRLQLSRELGLAPRQIKFWFQNRRTQMKAQGERADNCALRAENDKIRCENIVIREALKNVICPSCGGGPSLNDDSYFDEQKLRLENAQLKEELDRVSSIAAKYIGRPISQLPPVQPIHISSLDLTMSSFGGHGGYGGGPSLDLDLLPGSSSSVMPPHVPYQPACLSDMDKSLMSGIASNAMEELMSLLQTNEPLWMKSSADGRDVLNLDTYDKMFPKANSHLKNPNVRIEASRDSGVVIMNGLTLVDMFMDPSKWMELFPTIVTAARTIEVISTGMMGGHSGSLQLMYEELQVLSPLVSTREFYFLRYCQQIEQGLWAIVDVSYDFPQDNHFAAPFRSHRLPSGCFIQDMPNGYSKVTWVEHVEVEDKTPVHRLHRNLVYNGMAFGAQRWLAVLQRMCERLACLMVTGNSTRDLGGVIPSPEGKRSMMRLAQRMVTNFCASIGTSAGHRWTTLSGMNEIGVKVTVHKSTDPGQPSGVVLSAATTIWLPLPPQTVFNFFKDERKRPQWDVLSNGNVQEVAHIANGSHPGNCISVLRAYNTSQNNTLILQESCIDPSGSIVVYCPVELPSINIAMSGEDPSYIPLVPSGFTITPDGNHHEHQGGGGDGASTSSTPSRSSSTMVGMRSGGSLVTVAFQILVSSLPSAKLNMESVATVNNLISTTVQQIKAALNCPTS 733
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90641g00026 733 Gene3D - 15 102 - -
Stsc90641g00026 733 MobiDBLite consensus disorder prediction 650 682 - -
Stsc90641g00026 733 FunFam Homeobox-leucine zipper protein HDG1 18 105 - -
Stsc90641g00026 733 FunFam Homeobox-leucine zipper protein GLABRA 2 234 458 - -
Stsc90641g00026 733 ProSiteProfiles 'Homeobox' domain profile. 29 89 IPR001356 GO:0003677
Stsc90641g00026 733 MobiDBLite consensus disorder prediction 12 30 - -
Stsc90641g00026 733 Pfam Homeodomain 32 87 IPR001356 GO:0003677
Stsc90641g00026 733 MobiDBLite consensus disorder prediction 1 39 - -
Stsc90641g00026 733 SMART START_1 234 459 IPR002913 GO:0008289
Stsc90641g00026 733 CDD homeodomain 31 89 IPR001356 GO:0003677
Stsc90641g00026 733 MobiDBLite consensus disorder prediction 663 682 - -
Stsc90641g00026 733 SMART HOX_1 30 93 IPR001356 GO:0003677
Stsc90641g00026 733 SUPERFAMILY Homeodomain-like 12 89 IPR009057 -
Stsc90641g00026 733 ProSiteProfiles START domain profile. 225 462 IPR002913 GO:0008289
Stsc90641g00026 733 CDD START_ArGLABRA2_like 229 458 - -
Stsc90641g00026 733 SUPERFAMILY Bet v1-like 480 725 - -
Stsc90641g00026 733 ProSitePatterns 'Homeobox' domain signature. 64 87 IPR017970 GO:0000981|GO:0006355
Stsc90641g00026 733 SUPERFAMILY Bet v1-like 226 460 - -
Stsc90641g00026 733 Coils Coil 138 158 - -
Stsc90641g00026 733 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 30 729 IPR042160 -
Stsc90641g00026 733 Pfam START domain 236 459 IPR002913 GO:0008289
Stsc90641g00026 733 Gene3D - 233 459 IPR023393 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90641g00026 Stsc-Chr90641 247725 251283 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90641g00026 28 733 Homeobox Transcription Factor Family AT1G73360 64.838 0.0 932
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Stsc90641g00026 START 2.1e-49 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90641g00026 K09338 - gmx:100809075 1192.95