Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90641g00025 ATGGAGATGCAGGGCCAAATCGAAGGCACAAAGATAAGCAAGTCTGGCACGGCTAGTGATGGCCATTCCAATGATGGATCACAATCCCAATCGCCGGATATAAGTTCTGTTGAGAACAATCATGCCCCCAAGGCAAGGAAACCATATACCNNNNNNNNNNAGAAGTGGACTGAGGAAGAGCATGAAAAGTTCCTTGAAGCTTTGAAGTTGTATGGTCGGGGCTGGCGTCAAATTGAAGAGCATATAGGCACCAAAACTGCTGTTCAGATTCGAAGCCATGCACAAAAGTTTTTCTCTAAGGTTGTGCGGGAATCTGATGGAAGTGCTGAAAGTTCTATACAACCAATTGACATACCTCCTCCTCGTCCTAAAAGGAAACCCCTTCATCCATACCCCCGTAAATCAGCTAACTCTTTCAAAAAACACTCCATACTCAATGAACCAGAAAAATCTCCATCTCCAAATCTCTCTTCTGTGGAGAAAGACTCTCAATCTCCAACCTCTGTGCTATCTGCCTTTGGTTCGGAAGCATTTGGGTCTGCATTTTCAGAGCAGACCAATAGATGTCTTTCTCCGAACTCTTGCACCACTGACATTCACTCAATCAGCTTGTCACCTATTGAGAAGGAAAATGATTGCATGACATCTAAACCATCCGAGGAGGAAGACAAAGGGTCTCTAGCTTCTGCCCTTCTATCCATAAATTCAAAACCTCTCTTGCCCATGCCTGAGAAGTTGGAGTTGTGTTCCAAGCAATCCAAGTGTTCCAACAATGACGTTGCCAATGTCTTACCAGCTACTATTAAGCTGTTTGGAAGAACGGTCTCTATGGTGGTTAATCAGGAGTCAATTAATACTGAAGAGGAATGTGTTAAGCCATATACTACTAGGTCTGATGAAGTAGATGATGCCGAGAACAAGAAGCAATTGGATACACAGTTATCACTAGGTCTGTGTAATGGAAGCTGGCAAGTAATGCCTAAAGCAGATAAAGTGACAGGCATGGAACATCTGAAGGAGGACCTGTGCCTTGGAGAATCTGCACCTGAAGCATCTTTGCCATGGTGCAGTTTGTTTCAAGGAGTTCCAGCTGCCTACTTTGGTTCATCCAGTACAGTCCTAAATCCAGTGCCTCTTCGCCCCTCTTTGAAGGTAAGAACTAGAGAGGAAGAGGGTTCTTGTACTGGTTCCAATGGTGAATCGATCAATGATGTGGAAATTCAGGGCAAGATAAGGGGCAGGTCCTCGGACGCCGTTGATTCCAGGTGTCAACAAAAATCTCATGAAGAGGAAGAATTAGTCCCCCAGAAGTCTCCAAGGGGTTTTGTACCATACAAAAGATGTTTAGCTGAAAGAGATGCAGGTTCTTTGATTGTTGCATTGGAAGAAAGGAAGGGGCAAAGAGCTAGGGTGTGCTCATAG 1422 0.443 MEMQGQIEGTKISKSGTASDGHSNDGSQSQSPDISSVENNHAPKARKPYTXXXXKWTEEEHEKFLEALKLYGRGWRQIEEHIGTKTAVQIRSHAQKFFSKVVRESDGSAESSIQPIDIPPPRPKRKPLHPYPRKSANSFKKHSILNEPEKSPSPNLSSVEKDSQSPTSVLSAFGSEAFGSAFSEQTNRCLSPNSCTTDIHSISLSPIEKENDCMTSKPSEEEDKGSLASALLSINSKPLLPMPEKLELCSKQSKCSNNDVANVLPATIKLFGRTVSMVVNQESINTEEECVKPYTTRSDEVDDAENKKQLDTQLSLGLCNGSWQVMPKADKVTGMEHLKEDLCLGESAPEASLPWCSLFQGVPAAYFGSSSTVLNPVPLRPSLKVRTREEEGSCTGSNGESINDVEIQGKIRGRSSDAVDSRCQQKSHEEEELVPQKSPRGFVPYKRCLAERDAGSLIVALEERKGQRARVCS 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90641g00025 473 ProSiteProfiles Myb-like domain profile. 55 98 IPR001005 -
Stsc90641g00025 473 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 55 102 IPR017930 -
Stsc90641g00025 473 PANTHER SWI/SNF COMPLEX-RELATED 27 282 - -
Stsc90641g00025 473 MobiDBLite consensus disorder prediction 8 38 - -
Stsc90641g00025 473 Gene3D - 55 102 - -
Stsc90641g00025 473 FunFam protein REVEILLE 6 isoform X1 55 103 - -
Stsc90641g00025 473 ProSiteProfiles SANT domain profile. 51 102 IPR017884 -
Stsc90641g00025 473 MobiDBLite consensus disorder prediction 1 56 - -
Stsc90641g00025 473 CDD SANT 55 98 IPR001005 -
Stsc90641g00025 473 SUPERFAMILY Homeodomain-like 53 101 IPR009057 -
Stsc90641g00025 473 MobiDBLite consensus disorder prediction 148 170 - -
Stsc90641g00025 473 MobiDBLite consensus disorder prediction 106 170 - -
Stsc90641g00025 473 SMART sant 52 100 IPR001005 -
Stsc90641g00025 473 MobiDBLite consensus disorder prediction 207 226 - -
Stsc90641g00025 473 Pfam Myb-like DNA-binding domain 55 96 IPR001005 -
Stsc90641g00025 473 NCBIfam myb-like DNA-binding domain, SHAQKYF class 55 100 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90641g00025 Stsc-Chr90641 203902 207993 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Stsc90641g00025 Myb_DNA-binding 3.5e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90641g00025 - - gmx:778089 544.658