Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90641g00024 ATGGCTAATATATCTAACAGCTTCATCTTTGGTGGTGGTCTTGTTGGGGTTGCAGCACAACTTCCTCAATCTCCGTTTCCCTCATTACCCCTTTTAAATTCGACCCTTTTCCCCCAAAGACGCAAACTTTTCCTTAATTCCTCCAAAACCAACCACATAACAACCCCTTTCCCTTCTCCTTCTCCTTCTTCATCGCCATTCATCAACAAAGGTTGTTGCTTTGTGTTAGCATGTCTCCCACAACCACATGCTTCTGATTCGTCATCATCAACTTCTTCTAATTCCAATAACAGACCAAGTTCTCTTTCTGCAGCTCCTTCTCCTTCAACTAAGCTCTATGTTAGTGGGTTATCTTTTCGAACCACCGAAGAAAGCTTGCGAAATGCATTTGAGAATTTTGGTCAACTTTTAGAAGTGAATTTGGTAATGGATAAAATTGCAAACCGACCAAGAGGGTTTGCATTTCTTAGATATGCAACTGAACAGGAATCTCAGAAGGCTATCGAGGGAATGCATGGAAAGTTCTTGGATGGTAGGGTCATATTTGTGGAAGTTGCCAAACCAAGATCAGAACTAAGGCAAAGACAAAACACTAGATACTAG 603 0.4129 MANISNSFIFGGGLVGVAAQLPQSPFPSLPLLNSTLFPQRRKLFLNSSKTNHITTPFPSPSPSSSPFINKGCCFVLACLPQPHASDSSSSTSSNSNNRPSSLSAAPSPSTKLYVSGLSFRTTEESLRNAFENFGQLLEVNLVMDKIANRPRGFAFLRYATEQESQKAIEGMHGKFLDGRVIFVEVAKPRSELRQRQNTRY 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90641g00024 200 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 110 188 IPR000504 GO:0003723
Stsc90641g00024 200 SMART rrm1_1 111 184 IPR000504 GO:0003723
Stsc90641g00024 200 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 112 181 IPR000504 GO:0003723
Stsc90641g00024 200 Gene3D - 80 200 IPR012677 -
Stsc90641g00024 200 SUPERFAMILY RNA-binding domain, RBD 101 198 IPR035979 GO:0003676
Stsc90641g00024 200 MobiDBLite consensus disorder prediction 85 108 - -
Stsc90641g00024 200 PANTHER NUCLEOLAR PROTEIN 8 93 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90641g00024 Stsc-Chr90641 198630 203553 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90641g00024 110 200 Eukaryotic Initiation Factors Gene Family AT4G34110 28.571 1.08e-09 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90641g00024 - - ahf:112802436 271.166