Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90641g00018 ATGTCACCGGTTGGATTACCACCTGGGTTTAGGTTTCATCCAACAGATGAAGAGCTTGTTAATTATTATCTAAAGAGGAAGATCAATGGCCAAGAAATTGAACTTGATATCATTCCTGAGGTTGATCTCTACAAATGTGAACCATGGGAATTAGCAGAGAAATCATTTTTGCCGAGTAGAGATCCAGAGTGGTACTTCTTTGGACCAAGGGACAGAAAATACCCTAATGGTTTTAGAACGAATAGAGCAACGAGAGCAGGGTACTGGAAATCAACAGGTAAAGACAGAAGAGTTTCATGTCAAAGTAGACCAATTGGTATGAAGAAGACTTTGGTTTATTACAGAGGAAGGGCTCCTCAGGGAATTAGAACTGATTGGGTTATGCACGAATATCGCCTTGATGACAAAGACTCTGAAGATACGTCCGGTCTACAGGATACTTATGCATTGTGCCGAGTGTTCAAGAAAAATGGAATATGTTCGGATGTTGAAGAACAAGTAGGGCAATGTAGTAACATGTCATCACTAATTGAGAGCTCTCAAACCATAATCAATAACAACAACAATAATAATAATAATGAATATTGTGAAACCATGTCACCAGAGATGGCAGGGGTTTCATCTTCATGTTTGGAAGAGGAAGACAAAGATGATTCATGGATGCAGTTCATCACAGAAGATGCATGGTACTCTTCTAATCCACCAAATATGCTTGGTGCTTCTGCTCCTGCTGAACAAGTTTCACATATTACATTTACAAACTAA 765 0.3908 MSPVGLPPGFRFHPTDEELVNYYLKRKINGQEIELDIIPEVDLYKCEPWELAEKSFLPSRDPEWYFFGPRDRKYPNGFRTNRATRAGYWKSTGKDRRVSCQSRPIGMKKTLVYYRGRAPQGIRTDWVMHEYRLDDKDSEDTSGLQDTYALCRVFKKNGICSDVEEQVGQCSNMSSLIESSQTIINNNNNNNNNEYCETMSPEMAGVSSSCLEEEDKDDSWMQFITEDAWYSSNPPNMLGASAPAEQVSHITFTN 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90641g00018 254 SUPERFAMILY NAC domain 4 157 IPR036093 GO:0003677|GO:0006355
Stsc90641g00018 254 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 5 197 - -
Stsc90641g00018 254 Pfam No apical meristem (NAM) protein 7 133 IPR003441 GO:0003677|GO:0006355
Stsc90641g00018 254 Gene3D NAC domain 15 159 IPR036093 GO:0003677|GO:0006355
Stsc90641g00018 254 ProSiteProfiles NAC domain profile. 6 156 IPR003441 GO:0003677|GO:0006355
Stsc90641g00018 254 FunFam Nac domain-containing protein 86 15 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90641g00018 Stsc-Chr90641 164366 169077 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90641g00018 1 239 NAC Transcription Factor Family AT3G17730 79.184 1.20e-134 377
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Stsc90641g00018 NAM 1.1e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90641g00018 - - ahf:112750829 484.182