Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90641g00007 ATGGTTCGGAAGAAGAGAACTGAAGCACCTAGTTCCAGTGGCGGTGAAAGCTCTGAGGGCCAGCAGCGCCCCACCGAAAGGAGTGCTCCATCCCAACAGGCTGCTCCAACCGGTGGGCCTGGGCCGCAAGGGGGAGGTAGGAGTTGGGGTCCCCAAGGAGGACGCGGTGGTTATGGAGGCGGGCGTGGGCGTGGAATGCCTCAACAGCAGTATGGTGGCCCCCCTGAGTATCAAGGTAGGGGTAGGGGAGGACCTCCACAGCAAGGGTATGCTCCCCGTGGGGGATATGGTGGTGGCCGTGGTGGTGGTGGTGGCGTAGGACCTTCGTATGGTGGCCCCCCACGCCCCCAAGTTCCCGAGCTGCACCAAGCTACCCCCCCAGTTCAGTATCAAGCGGCGGCATCTCCTCGGCCTCCACCCTCTGAAGCCAGTTCCAGTTCATCCCAGCCACAGGAGATGCCCCAACTGGAACAGCAAATGGGGCAGATGATAATTCATACCGAAGCTGCCCCCCCTACTGGTCCACCAGCTAGCAAGTCATCCATGAGGTTTCCCCTTCGCCCTGGGAAGGGTAGTTATGGCACGAAATGTATTGTCAAGGCGAACCATTTCTTTGCTGAGCTTCCAAACAAAGATCTGCATCAATATGATGTAACAATCACTCCAGAAGTTACATCAAGAGGTGTTAACCGTGCTGTTATGGAGGAGTTGGTGAGGCTCTACCGAGAATCCCATTTGGGGAAGAGACTTCCTGCTTATGATGGGCGAAAGAGCCTCTATACAGCTGGTCCACTGCCCTTTGTGTCAAAGGAGTTTAGGATCATGTTAATTGATGAAGATGATGGAACAGGAGCACAAAGGAGGGAGAGGGAGTTCAAAGTTGTTCTTGATATTGTGTTGCGTGAACTCCCTACCACCAGGTATTGTCCTGTAGGAAGATCATTTTATTCACCTGATCTTGGAAGAAGACAGCCTTTGGGTGAGGGGTTAGAAAGCTGGCGAGGTTTCTATCAGAGTATTCGTCCTACACAGATGGGACTTTCCCTGAACATTGATATGTCCTCCACTGCGTTTATTGAGCCATTACCGGTAATTGAGTTTGTAACTCAGCTACTGAACAGGGATGTTTCCACCCGACCACTGTCAGATGCTGATCGTGTGAAGATCAAGAAAGCTCTGCGTGGTATCAAGGTTGAAGTAACTCATCGTGGAAACATGAGAAGAAAATATCGCATCTCTGGTCTGACTTCCCAGGCTACTAGAGAGTTGACATTCCCTGTAGACGAGAGGGGAACAATGAAGTCCGTTGTCGAGTACTTCTCTGAGACCTACGGGTTTCACATTCAACATACTCAGTGGCCTTGTTTGCAAGTGGGAAATACACAGCGGCCAAATTATCTGCCAATGGAGGTTTGCAAGATTGTAGAAGGGCAGAGGTATTCTAAGAGGTTGAATGAAAGACAGATTACTGCTTTGCTAAAAGTCACATGTCAGCGTCCTGTTGAAAGGGAGCGTGACATAATGCAGACAGTACATCACAATGCCTATGATCAAGATCCTTATGCTAAGGAGTTTGGAATCAAGATCAGTGAAAAGCTTGCCCAAGTTGAAGCTCGCATCCTTCCTCCACCCTGGCTCAAATATCATGATACAGGTAGAGAAAAGGACTGCCTACCTCAGGTTGGCCAGTGGAATATGATGAACAAGAAAATGGTCAATGGAGGAACAGTCAACCATTGGTTCTGCATTAACTTTTCCAGAAATGTGCAAGATAGTGTTGCTCGCACATTTTGCTATGAACTTGCTCAGATGTGTCAAGTATCTGGCATGGCATTCAATCTGGAACCAGTAGTGCCCCCAGTCAGTGCTCGTCCTGACCAAGTCGAGAAGGTCCTGAAAACTAGGTATTATGATGCCAAGAACAAGCTGCCTGGAAAGGATCTTGATTTGCTTATCGTTATCTTGCCGGACAATAATGGTTCTCTTTATGGTGACCTGAAACGGATATGTGAGACTGATCTTGGGCTTGTTTCCCAATGTTGTTTAACAAAGCATGTCTACAAAATGAGCAAGCAGTATCTTGCAAATGTTGCTTTGAAAATTAATGTTAAGGTTGGTGGAAGAAACACCGTGCTTGTTGATGCCCTTTCGCGGCGCATTCCCCTTGTCAGTGACAGGCCTACAATAATTTTTGGAGCTGATGTTACTCATCCTCACCCTGGAGAGGATTCAAGCCCATCTATTGCAGCTGTTGTGGCTTCCCAAGATTGGCCTGAGATTACCAAGTATGCTGGTTTGGTTTGTGCACAAGCACATCGACAGGAACTCATTCAAGATCTCTTCAAGCAATGGCAAGATCCTGTCAGAGGACCAGTGACGGGTGGAATGATCAAGGAGCTTCTCATCTCTTTCCGGAGGGCTACTGGACAAAAGCCACAGCGCATCATATTTTACAGGGATGGTGTGAGTGAGGGCCAATTTTATCAAGTTCTATTGTTTGAGCTTGATGCTATTAGAAAGGCTTGTGCTTCTCTTGAGCCCAATTATCAGCCTCCGGTGACTTTTGTGGTAGTTCAAAAGCGACATCACACTAGACTCTTTGCCAGCAACCATCATGATCGAAATTCTATTGATCGGAGCGGGAATATATTGCCCGGTACTGTGGTGGACTCCAAAATATGCCACCCAACTGAATTTGACTTTTATCTTTGTAGTCATGCTGGAATTCAGGGAACTAGCCGTCCAGCTCACTATCATGTTCTGTGGGATGAAAACAATTTCACGGCTGATGCTCTTCAAATGCTTACAAACAACCTGTGCTACACCTATGCCAGATGCACCCGTTCTGTTTCAATTGTGCCCCCTGCATATTATGCTCATTTGGCTGCATTCCGAGCCCGATTTTACATGGAGCCGGAAACATCTGACAGTGGCTCCATGACAAGTGGTGCTGCAGCGGGTCGCGGTATGGGTGCCGGACGCAGCACACGCGCACCGGGTGCCAGTGCTGCTGTGAGGCCCCTTCCATCACTCAAGGACAATGTCAAGAGGGTCATGTTCTATTGCTGA 3069 0.4875 MVRKKRTEAPSSSGGESSEGQQRPTERSAPSQQAAPTGGPGPQGGGRSWGPQGGRGGYGGGRGRGMPQQQYGGPPEYQGRGRGGPPQQGYAPRGGYGGGRGGGGGVGPSYGGPPRPQVPELHQATPPVQYQAAASPRPPPSEASSSSSQPQEMPQLEQQMGQMIIHTEAAPPTGPPASKSSMRFPLRPGKGSYGTKCIVKANHFFAELPNKDLHQYDVTITPEVTSRGVNRAVMEELVRLYRESHLGKRLPAYDGRKSLYTAGPLPFVSKEFRIMLIDEDDGTGAQRREREFKVVLDIVLRELPTTRYCPVGRSFYSPDLGRRQPLGEGLESWRGFYQSIRPTQMGLSLNIDMSSTAFIEPLPVIEFVTQLLNRDVSTRPLSDADRVKIKKALRGIKVEVTHRGNMRRKYRISGLTSQATRELTFPVDERGTMKSVVEYFSETYGFHIQHTQWPCLQVGNTQRPNYLPMEVCKIVEGQRYSKRLNERQITALLKVTCQRPVERERDIMQTVHHNAYDQDPYAKEFGIKISEKLAQVEARILPPPWLKYHDTGREKDCLPQVGQWNMMNKKMVNGGTVNHWFCINFSRNVQDSVARTFCYELAQMCQVSGMAFNLEPVVPPVSARPDQVEKVLKTRYYDAKNKLPGKDLDLLIVILPDNNGSLYGDLKRICETDLGLVSQCCLTKHVYKMSKQYLANVALKINVKVGGRNTVLVDALSRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEITKYAGLVCAQAHRQELIQDLFKQWQDPVRGPVTGGMIKELLISFRRATGQKPQRIIFYRDGVSEGQFYQVLLFELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFASNHHDRNSIDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADALQMLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDSGSMTSGAAAGRGMGAGRSTRAPGASAAVRPLPSLKDNVKRVMFYC 1022
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90641g00007 1022 Pfam PAZ domain 366 491 IPR003100 GO:0005515
Stsc90641g00007 1022 Pfam Argonaute linker 2 domain 502 548 IPR032472 -
Stsc90641g00007 1022 Gene3D - 719 1022 IPR036397 GO:0003676
Stsc90641g00007 1022 SMART Piwi_a_2 650 971 IPR003165 GO:0003676
Stsc90641g00007 1022 Pfam N-terminal domain of argonaute 196 301 IPR032474 -
Stsc90641g00007 1022 MobiDBLite consensus disorder prediction 138 155 - -
Stsc90641g00007 1022 Pfam Glycine-rich region of argonaut 72 171 IPR024357 -
Stsc90641g00007 1022 Gene3D paz domain 355 480 - -
Stsc90641g00007 1022 Pfam Argonaute linker 1 domain 310 360 IPR014811 -
Stsc90641g00007 1022 Pfam Mid domain of argonaute 559 634 IPR032473 -
Stsc90641g00007 1022 FunFam Argonaute 10 540 713 - -
Stsc90641g00007 1022 SUPERFAMILY Ribonuclease H-like 636 971 IPR012337 -
Stsc90641g00007 1022 ProSiteProfiles Piwi domain profile. 650 971 IPR003165 GO:0003676
Stsc90641g00007 1022 SMART PAZ_2_a_3 366 498 IPR003100 GO:0005515
Stsc90641g00007 1022 SMART DUF1785_2 309 361 IPR014811 -
Stsc90641g00007 1022 CDD PAZ_argonaute_like 361 475 - -
Stsc90641g00007 1022 MobiDBLite consensus disorder prediction 1 155 - -
Stsc90641g00007 1022 ProSiteProfiles PAZ domain profile. 362 476 IPR003100 GO:0005515
Stsc90641g00007 1022 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 170 972 - -
Stsc90641g00007 1022 Pfam Piwi domain 651 970 IPR003165 GO:0003676
Stsc90641g00007 1022 MobiDBLite consensus disorder prediction 11 38 - -
Stsc90641g00007 1022 FunFam Protein argonaute-2 355 481 - -
Stsc90641g00007 1022 FunFam protein argonaute 10-like 719 1022 - -
Stsc90641g00007 1022 Gene3D - 540 713 - -
Stsc90641g00007 1022 MobiDBLite consensus disorder prediction 979 1004 - -
Stsc90641g00007 1022 SUPERFAMILY PAZ domain 198 513 IPR036085 GO:0005515
Stsc90641g00007 1022 CDD Piwi_ago-like 520 970 IPR045246 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90641g00007 Stsc-Chr90641 55209 60749 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90641g00007 76 1022 Eukaryotic Initiation Factors Gene Family AT1G48410 78.723 0.0 1547
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90641g00007 K11593 - gmx:100780375 1661.35