Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90640g00034 ATGGTAGGACTTGAAATCATACCAATAGGAACAATTTTTGCAGTGCTAACCAACCAGGTCTTGAGAACGGCTAGCGCAGCAGCAGATGTTCTTATAGGAAAAGAAAGTTTCAAAATCCTCTCAAAACACCTCTTAGATATTGTGCCTGTTCTGAAGGAACTACAGCTTCAAGAGCTCAATGAATCTCAAGCAGCAAGGGCTGCTTTGGAATCTCTAGAATCAGATGTGAAAAGGGCTAACAATTTGGTTGAGAAGTACAGGAACCGTGGCAAATTCTACCTTCTGGTTAAGTGCAGATACATAGTTGGGGAGGTTGAGCAAGTCACAAGAGATATTGGCAAGTCTTTGGCTGCGCTTTCGCTTGCGAATACTGAAGTCCTAACAAGAATCTCTGACCAGGTTGATAGGCTGCAGAATGAGATGCAGAGAGTGGAGTTTGAGGCTTCACAATCTCAGCTTCAGATTGTTGAGAAGTTGGATTATGCACTTAGAGAACAGAAACTTGATCAGGCTTTCGCGAATGACATGCTTGAGGAAATAGCAAGAGCTGTTGGAGTTCCAGTGGAGCCTTCAGAGATAGGCAAAGAATTGGCCAGCATTAGGAAGGAGAAAGAGGAAGCTGCAAACCGGAAAGAGCGAGCCGAGTACATATTCTTGGAGCAGATCATTGAGTTACTCTCTAGAGCTGATGCAGCAAGGGACTATGAAGGAGTGAAGAAACAATACTTTGAAAGAGTTCAAGCTATAGAAAGATATGATTCAAGGGAAACATATATCTCACCATTCAATCCTTTCCTTTGCTCGATAACCGGAGCGGTTATGGTTGATCCTGTTAGTCTTTGTACTGGTACTACATGTGAGAGATCTGCCATTGAAGATTGGTTTCACAATGGGAACCGAACAGATCCAGAAACATACGAGGTTCTTGAAGATACTACCTTGAGGTCTAACACTCCACTAAGACAATCCATAGAAGAATGGAGAGAACTCAATTATTGTCTTGCTATAAGGTCTATCAGGGAAAACCTGATCACAAATTATGAAGTGCATGAGTCTTTGAGCCTAATGCAGGCTCTTATGAGAGAAAATTCCATTAACAAGGATTGGCTTTCTATTGGAGGGGTAACTGATGTTGTTATCTATATCCTTGGGAACTCTAATTACAAAGAAGCCAAGTTGAGGATTCTGATTACTCTGAAGGATATTGTAGAGGGACATGCAATAAACAAGGACAAGGTGGCTGAATCTCATGGATGGGATCAGATTATTTGCTGCTTAGGGAGTGATTCCAGCATTTCAAAGGCAGCAATTGATCTCCTGTACGAATTGCTTCAAGCGCGATCCGGTTGGAACGAATGCTTTTGCAAAAATCTCTCTGAGAATCAGAATGCAATTCCTTTCCTTGTTGCCCTTCTAAAGGGATCAGACAATGATTCAGCAGAGGCAGCAGAAAAGATTTTGACGGAACTTTTCAGGATAAATGAGGACAGTATTACCACTGCTGCTAGATTTGGCTGGTATAAACCTCTCGTCGATCGCATGATTCAAGAACCAGATTCGAGAATAGCAATGGCGAAATGCATAGTAAACTTGGAGTTAAACCTTTTAGAGTTGAAAGAACTTGGTGAGGAAGGTGTTATAACTCCTCTGCTAGAAATGCTATCTGGAAACATTGAATCAAAGGACTTGTCATTATCAGCACTAGTAAAACTAGCAGCATGTCATCCAAACAAGAGAATAATCGCAGAATCCGGAGGCATTCCTTTGATTCTTGATCTAACATTCTCAACTCGGATGAGGAAATTCGTTACTATCAAATGTTGTGAAATCCTGGAGAATCTTTCCTCTGATGAAGATGGAATAGACTTGTTTGTGGACAGAGAAGGGAATCAACTTGAGTTAGACTCCATCATCACCAATTTGCTAGCACTGCAGCAGACCAATGGTGTGTCTCTAATTCTTCCACTTCTTGATGACTCTGACTCAGAAATCCGAGAAACTGCAATAAACTTGCTCTTTCTTTTCTCCCAGCACGAGCCGGATGGAGTAGTTGAGTATCTCTTCAGGCCTAGAAGGCTTGAAGCCTTGATTGGGTTTCTTGAGGATGATGAGAATGACAATGTGAGGATGGCTGCGGCCGGATTACTCGCAAACTTGCCTAAATCAGAAAGAGAACTCACTATGAAGTTGATTGAATTAGGTGGACTTGATGCTATAATAAGCATATTGAAAACAGGTACAATGGAAGCTAAGGAAAATGCTCTGAGTGCACTCTTTAGATTCACTGATCCTACAAACATCGATTCGCAGCGCGATCTTGTTAAACGAGGGATATACCCTCTACTTGTCAACTTTCTCAACACTGGTTCTGTCACAGCAAAGGCAAGAGCAGCTGCATTCATTGCTGATCTTTCAATGAGCACTCCAAAGCTCACATTTGTTTCTAAATCTCCCAGCTGCTGGTTTTTCAAGTCTTCGCGAGTTCCCTTATGCTCGGCACATGGAAGCATATGCAGTGTTGCCACCACATTTTGCCTAATTGAAGCAAATGCTTTACCTGGATTGATCAAATTACTGCATGGTGAGGTTCATGCTACAGCTTATGAAGCAATTCAAACACTTTCCACATTGGTTTTGGAGGATTTTCCTCAGAGAGGAGCCATAGTCTTGCATAAGAACAATGCAATAACACCCTTGTTGGAGATTCTGAATTGGGGTTCTGATTCTCTCAAAGCTGAAGCTCTAGGACTATTGGAAAAGGTCTTTGTGTCAAAGGAAATGGTGGAGAATTATGGAATAACAGCCAGGCTGAGGCTAATTAGTATCACCGAAATGAATATCTATGGAGATGGCCACCTTAGGAGGAAAGCTGCTAAGGTACTATCCTTGCTCGAACGATATTCGAGATCATCGTCCTCTGCAGTCTCCGGTGTTCCCGAGTGA 2943 0.4217 MVGLEIIPIGTIFAVLTNQVLRTASAAADVLIGKESFKILSKHLLDIVPVLKELQLQELNESQAARAALESLESDVKRANNLVEKYRNRGKFYLLVKCRYIVGEVEQVTRDIGKSLAALSLANTEVLTRISDQVDRLQNEMQRVEFEASQSQLQIVEKLDYALREQKLDQAFANDMLEEIARAVGVPVEPSEIGKELASIRKEKEEAANRKERAEYIFLEQIIELLSRADAARDYEGVKKQYFERVQAIERYDSRETYISPFNPFLCSITGAVMVDPVSLCTGTTCERSAIEDWFHNGNRTDPETYEVLEDTTLRSNTPLRQSIEEWRELNYCLAIRSIRENLITNYEVHESLSLMQALMRENSINKDWLSIGGVTDVVIYILGNSNYKEAKLRILITLKDIVEGHAINKDKVAESHGWDQIICCLGSDSSISKAAIDLLYELLQARSGWNECFCKNLSENQNAIPFLVALLKGSDNDSAEAAEKILTELFRINEDSITTAARFGWYKPLVDRMIQEPDSRIAMAKCIVNLELNLLELKELGEEGVITPLLEMLSGNIESKDLSLSALVKLAACHPNKRIIAESGGIPLILDLTFSTRMRKFVTIKCCEILENLSSDEDGIDLFVDREGNQLELDSIITNLLALQQTNGVSLILPLLDDSDSEIRETAINLLFLFSQHEPDGVVEYLFRPRRLEALIGFLEDDENDNVRMAAAGLLANLPKSERELTMKLIELGGLDAIISILKTGTMEAKENALSALFRFTDPTNIDSQRDLVKRGIYPLLVNFLNTGSVTAKARAAAFIADLSMSTPKLTFVSKSPSCWFFKSSRVPLCSAHGSICSVATTFCLIEANALPGLIKLLHGEVHATAYEAIQTLSTLVLEDFPQRGAIVLHKNNAITPLLEILNWGSDSLKAEALGLLEKVFVSKEMVENYGITARLRLISITEMNIYGDGHLRRKAAKVLSLLERYSRSSSSAVSGVPE 980
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90640g00034 980 Gene3D - 818 975 IPR011989 -
Stsc90640g00034 980 Gene3D - 634 817 IPR011989 -
Stsc90640g00034 980 SUPERFAMILY ARM repeat 642 964 IPR016024 -
Stsc90640g00034 980 Coils Coil 127 154 - -
Stsc90640g00034 980 CDD MLKL_NTD 34 145 - -
Stsc90640g00034 980 Pfam U-box domain 265 329 IPR003613 GO:0004842|GO:0016567
Stsc90640g00034 980 Coils Coil 62 89 - -
Stsc90640g00034 980 Gene3D - 342 633 IPR011989 -
Stsc90640g00034 980 SMART arm_5 839 879 IPR000225 GO:0005515
Stsc90640g00034 980 SMART arm_5 636 677 IPR000225 GO:0005515
Stsc90640g00034 980 SMART arm_5 883 923 IPR000225 GO:0005515
Stsc90640g00034 980 SMART arm_5 680 721 IPR000225 GO:0005515
Stsc90640g00034 980 SMART arm_5 574 616 IPR000225 GO:0005515
Stsc90640g00034 980 SMART arm_5 723 763 IPR000225 GO:0005515
Stsc90640g00034 980 CDD RING-Ubox_PUB 265 314 IPR045210 -
Stsc90640g00034 980 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 11 649 - -
Stsc90640g00034 980 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 263 334 IPR013083 -
Stsc90640g00034 980 SUPERFAMILY RING/U-box 248 330 - -
Stsc90640g00034 980 Gene3D - 9 123 IPR036537 GO:0007166
Stsc90640g00034 980 ProSiteProfiles U-box domain profile. 260 334 IPR003613 GO:0004842|GO:0016567
Stsc90640g00034 980 SUPERFAMILY ARM repeat 336 680 IPR016024 -
Stsc90640g00034 980 SMART Ubox_2 264 327 IPR003613 GO:0004842|GO:0016567
Stsc90640g00034 980 Coils Coil 197 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90640g00034 Stsc-Chr90640 223540 226788 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90640g00034 262 937 U-box Gene Family AT1G76390 25.480 2.99e-37 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90640g00034 - - gmx:100783638 1435.62