Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90640g00027 ATGGATGCAGCAGATATCAAGAATCTTAAGGCAACAGAGCTGAGATTGGGTTTGCCTGGAACTCATCTTGAAGAGAATAATGTTATTATAACTGAAGAAAAATCATCATTATCATCAACAACACCAGTTCTTAACAACAACAAGAGGCCACTGCAGGAAGAAACTTCTCCGGCTAATAATAAGGATTGTGGATCTAAGTGCTCTAATAACAACACTGATGATGATGCTGCACCCCCACCTTCCAAGGCAAAGATAGTGGGGTGGCCACCAATCAGATCATACAGGAAGAACAGCCTTCAGGAACAATCTGAGGCTGCAGGTGGGATCTATGTCAAGGTCAGCATGGATGGAGCACCTTACCTCAGAAAGATTGATTTGAAGGTCTATGGAGGCTATCCACAACTCCTCAAAGCCCTTGAAAACATGTTCAAGTTGACCATAGGTGAGTACTCTGAAAAGGAAGGGTATAAGGGATCTGATTATGCACCTACATATGAGGACAAGGATGGTGACTGGATGCTGGTTGGAGATGTTCCATGGGACATGTTTGTGACCTCATGCAAGAGGCTAAGAATCATGAAAGGATATGAAGCCAGAGGTTTGGGTTGTGCTGTATGA 618 0.4353 MDAADIKNLKATELRLGLPGTHLEENNVIITEEKSSLSSTTPVLNNNKRPLQEETSPANNKDCGSKCSNNNTDDDAAPPPSKAKIVGWPPIRSYRKNSLQEQSEAAGGIYVKVSMDGAPYLRKIDLKVYGGYPQLLKALENMFKLTIGEYSEKEGYKGSDYAPTYEDKDGDWMLVGDVPWDMFVTSCKRLRIMKGYEARGLGCAV 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90640g00027 205 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 8 198 IPR003311 GO:0005634|GO:0006355
Stsc90640g00027 205 MobiDBLite consensus disorder prediction 32 87 - -
Stsc90640g00027 205 Gene3D - 103 205 - -
Stsc90640g00027 205 SUPERFAMILY CAD & PB1 domains 104 194 - -
Stsc90640g00027 205 MobiDBLite consensus disorder prediction 32 76 - -
Stsc90640g00027 205 ProSiteProfiles PB1 domain profile. 108 195 IPR000270 GO:0005515
Stsc90640g00027 205 Pfam AUX/IAA family 12 202 IPR033389 -
Stsc90640g00027 205 FunFam Auxin-responsive protein 103 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90640g00027 Stsc-Chr90640 162603 164173 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90640g00027 97 201 B3 DNA Binding Superfamily AT2G46530 35.849 8.57e-11 58.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Stsc90640g00027 AUX_IAA 1.9e-58 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90640g00027 K14484 - qsu:112011057 275.018