Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90640g00023 ATGTTGGCAAAGGAGCATGGCTTGAATCTCAAGGAGACTGAGCTCTGCCTTGGCTTGCCCGGGGGAGGGGGAGGCGGAGGCGAGGCAGCAGCCGAAACTCTGAGGACCACCGGGAAGAGAGGCTTCTCTGAAACGGTTGATCTGAAGCTTAACCTTCAAGGAAATGATAATAACAAGGAAGATCTGGATGATAATCTGAAGAATGTTCCAAAGGAGAAGACCCTCCTTAAGGACCCTGCCAAGCCACCAGCTAAGGCTCAAGTAGTTGGATGGCCACCAGTGAGGTCATACAGAAAGAACATGATGGCGCAAAAGGTGAGCACTGAGGAGAATAAGAGTGGCAGCGCCACCACTGAGAAGACAGCGAGCAGCGCCGCCACCGCCACAGCCACAGCCACTGCAGCTTCTGGTGGTTCATTTGTGAAGGTGTCCATGGATGGAGCTCCTTACCTTCGTAAGGTTGACTTGACAATGTACAAAAGCTACCAAGACTTATCTGATGCCTTGGCCAAAATGTTCAGCTCCTTCACCATGGGTAACTATGGGTCCCAAGGAATGATTGATTTCATGAATGAGAGCAAGTTGATGGATCTTCTTAACAGCTCTGAGTATGTGCCAACCTATGAAGATAAGGATGGTGATTGGATGCTCGTGGGTGATGTCCCATGGGAGATGTTTGTTGGGTCATGCAAGCGTCTGCGAATAATGAAAGGATCAGAAGCAATTGGGCTTGCGCCAAGGGCCATGGAAAAATGCAAAAGCAGAAGCTGA 771 0.4994 MLAKEHGLNLKETELCLGLPGGGGGGGEAAAETLRTTGKRGFSETVDLKLNLQGNDNNKEDLDDNLKNVPKEKTLLKDPAKPPAKAQVVGWPPVRSYRKNMMAQKVSTEENKSGSATTEKTASSAATATATATAASGGSFVKVSMDGAPYLRKVDLTMYKSYQDLSDALAKMFSSFTMGNYGSQGMIDFMNESKLMDLLNSSEYVPTYEDKDGDWMLVGDVPWEMFVGSCKRLRIMKGSEAIGLAPRAMEKCKSRS 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90640g00023 256 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 8 243 IPR003311 GO:0005634|GO:0006355
Stsc90640g00023 256 SUPERFAMILY CAD & PB1 domains 132 237 - -
Stsc90640g00023 256 Pfam AUX/IAA family 13 247 IPR033389 -
Stsc90640g00023 256 MobiDBLite consensus disorder prediction 103 126 - -
Stsc90640g00023 256 ProSiteProfiles PB1 domain profile. 138 238 IPR000270 GO:0005515
Stsc90640g00023 256 Gene3D - 133 250 - -
Stsc90640g00023 256 FunFam Auxin-responsive protein 133 248 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90640g00023 Stsc-Chr90640 120447 123305 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90640g00023 104 241 B3 DNA Binding Superfamily AT2G46530 30.435 2.03e-09 55.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Stsc90640g00023 AUX_IAA 1.3e-83 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90640g00023 K14484 - gmx:547949 382.489