Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90640g00021 ATGACGGGGCAAGCTGTGAAGGTTAATAGAGCCAAGCTCGAGGCATGCTTGACATGTCCCTTGTGCAATAAATTGTTCAACAATGCCACCACCATTTCAGAATGCCTACACACTTTTTGCAGGGGATGCATAGATAAGAAGCTAATAGATGAGCAGTTAAAGCACTGCCCAGTATGCAATGCGAACTTGGGTTGTTCTCCACTTGATAAATTAAGGACAGATCATAGTCTGCAAGATTTGAGGGACAGAATTTTGCCTCAAGAAAGAAAAATTGCCAAAACACCTAAGAATTCTGTGGCTTCAGTTAAGAGACAGAAGAAGAAATCTCTGTCTTCTCTAAAAGCCAATGCAAGAGGAGCCAAAGCTACTCCTGAAAGAGAAGTTTTCGCTCCCTCACAACCGGATTGTTCTTCTCCTAAGCCTGAGAAGGTGGAGGAAGATGTCAGGAAAGATGAGAAACAACCGCGGAGGATAGGAATCTTGGATGAAGTCTCCACAAAGTTAACTGCAAGAAGAGCAAAAGTTGTAGCTAGAAAAAAGTACCTTCTTAAAGAGTTACCGCCTCCTTGCGAACCGGATAAAGTAATTGGAGATCAGAGGAAAGAAGATGATGATTGCTTTCTGCTCAAAATTTCCAATGAGAGTTCAAAAGCCAGAGTTCAGGATTCTTCAAAAGCAGATTCAAGTCAACAAATAGTGGCAAACAAGATTCTAATGGACAATGTTGAATCATGTCAAGAAAAGCTTGATTTGTTTGAGCCATTAAATTCCTTTGTAGAAGCTGCAAGGAAGAACAAATCTTGCAGCAAGTCCACTATGCAAGAACATGCTGTCACTCCATCAGTAGAGTCTAGTGACAATGATTGCCAGCCTATGGTTGAAGTTAAGAGACATTGTCACCAAACCAATGAAAATGATGATCAGAATAATGAACCGAATCCTTCGAGATCATCGGATACAAATGGGAGAAAACTCAAATTCTCTGAGGACTTGAATGTTCCAGTAGTGCAGCCTGTGATTACTTCAAATGGTGAAAGCAACAGAGTTTTTGGTCCAGTTTGGTTCTCCTTGGTTGCTTCTGAAGTGAGTGATGAAGGTGCACAATTGCCAAAAATATCCCCCAGCTTCTTAAGGGTCAAGGATGGTACTTTACTTGTTTCCCATATCAAAATGTACATAGTGAAGAAGCTTGGTCTTGTTAGTGAATCTGAGGTGGAGATCTTGTTGCAAGGTAAGCCGGTTCTAGCTTGCATGCAACTGCAACAGTTGGTAGAGTTGTGGCTGCAAACAAAGCCATTGAATGAGAAGTTTCAGACACATGTTGGAAGCTCAGCTAAGGATTTTGTTATGGTCCTTTCATATCATCGAAAGACTTGA 1377 0.4125 MTGQAVKVNRAKLEACLTCPLCNKLFNNATTISECLHTFCRGCIDKKLIDEQLKHCPVCNANLGCSPLDKLRTDHSLQDLRDRILPQERKIAKTPKNSVASVKRQKKKSLSSLKANARGAKATPEREVFAPSQPDCSSPKPEKVEEDVRKDEKQPRRIGILDEVSTKLTARRAKVVARKKYLLKELPPPCEPDKVIGDQRKEDDDCFLLKISNESSKARVQDSSKADSSQQIVANKILMDNVESCQEKLDLFEPLNSFVEAARKNKSCSKSTMQEHAVTPSVESSDNDCQPMVEVKRHCHQTNENDDQNNEPNPSRSSDTNGRKLKFSEDLNVPVVQPVITSNGESNRVFGPVWFSLVASEVSDEGAQLPKISPSFLRVKDGTLLVSHIKMYIVKKLGLVSESEVEILLQGKPVLACMQLQQLVELWLQTKPLNEKFQTHVGSSAKDFVMVLSYHRKT 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90640g00021 458 SMART ring_2 19 59 IPR001841 -
Stsc90640g00021 458 ProSiteProfiles Zinc finger RING-type profile. 19 60 IPR001841 -
Stsc90640g00021 458 MobiDBLite consensus disorder prediction 94 153 - -
Stsc90640g00021 458 Pfam Zinc finger, C3HC4 type (RING finger) 19 59 - -
Stsc90640g00021 458 ProSitePatterns Zinc finger RING-type signature. 35 44 IPR017907 -
Stsc90640g00021 458 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 112 IPR013083 -
Stsc90640g00021 458 MobiDBLite consensus disorder prediction 306 321 - -
Stsc90640g00021 458 MobiDBLite consensus disorder prediction 269 288 - -
Stsc90640g00021 458 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 1 457 IPR044807 GO:0004842
Stsc90640g00021 458 MobiDBLite consensus disorder prediction 139 153 - -
Stsc90640g00021 458 CDD RING-HC_PCGF 17 60 - -
Stsc90640g00021 458 MobiDBLite consensus disorder prediction 302 323 - -
Stsc90640g00021 458 SUPERFAMILY RING/U-box 13 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90640g00021 Stsc-Chr90640 102443 105005 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90640g00021 1 380 C3H Transcription Factor Family AT2G30580 29.949 2.12e-34 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90640g00021 K16277 - pop:7474161 305.064