Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90639g00027 ATGGAGTTGTTTCCAGCACAACCAGACTTGTCCTTGCAAATCAGCCCTCCAAACAACGCCACCGCCACCGCCAACTCGAAGCAGCAACAACAACAACAAGACGTTGATTTGGGTTTCTGGAAGAGAGCCTTGGACTCTTCTAGAACCTCCTTCTCCAACTCTTCTTCTTCTTCTTCTACTTTCTCCAAACCCTGCTTCGACCTCTCCCTCTCCAACCCAACCACAACAACAAGGCCTAATAATAACAATAATAATCTTTCTTCATCATCACCACACTATTACTTCTCCCCTAATAATAATAATACCGATAATAACCTCATTCACCACCATAACAACAACAACAACAGTCCTTTGTTTCAATCGTTTCACCATTACTACCACCACCAGCACAACCCACTGTTACAGCCGCAGCCGCAGAGCCTAAGCCAGGAGCTTGGCTTTCTGAGACCAATCAGAGGGATCCCGGTGTACCAGAACCCACCTTCTTTGCCATTTCCGCAACACCACCATCTTCTAGAACCTTCGTCTCCTCCCACGACGGCCAACACGGGGTCCGCCGTGTCAAGTCACTTTCAGTCTCAGGCTTTGATGCGGTCGAGATTCTTGTCGAGATTCCCCGCGAAACGGAGCATGAGAGCCCCCAGGATGCGGTGGACTACCACACTCCATGCTCGCTTTGTTCATGCCGTTGAACTCCTTGGCGGCCATGAAAGGGCTACACCAAAATCAGTTCTTGAACTAATGGATGTGAAGGATCTCACTCTAGCACATGTTAAGTCACATTTACAGATGTACCGGACGGTGAAAACTACAGATAGAGCAGCGGCTTCTTCAGGAGATACATCTGAAGACATAATGTTTGACATAAACTCACCATCAACAAGGAGATCTGATCTATCCGTTAAGCAGGGAAGAAAAGATAATAACAATAACAACAACAACAATGTTAATCAAGATAAAGAATATCGTGGCCTTTGGAGTAACTCTTCCAGGGAAGCTTGGTTGCATGGGAAGCCAAAGCTTGATTCTGTTGGGAACAACAACGTGAATTCCCTTGAGGAAATGGATCCAAAGTGTGTAAGCTATGAGAGAATATCAGATGGAAGCTCATCCTCAAACGTGTCAGCATCAACAAGCCCCAAGAAACCTAATTTGGATTTGGAATTCACATTGGGACAACCACTTTGA 1188 0.4596 MELFPAQPDLSLQISPPNNATATANSKQQQQQQDVDLGFWKRALDSSRTSFSNSSSSSSTFSKPCFDLSLSNPTTTTRPNNNNNNLSSSSPHYYFSPNNNNTDNNLIHHHNNNNNSPLFQSFHHYYHHQHNPLLQPQPQSLSQELGFLRPIRGIPVYQNPPSLPFPQHHHLLEPSSPPTTANTGSAVSSHFQSQALMRSRFLSRFPAKRSMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDRAAASSGDTSEDIMFDINSPSTRRSDLSVKQGRKDNNNNNNNNVNQDKEYRGLWSNSSREAWLHGKPKLDSVGNNNVNSLEEMDPKCVSYERISDGSSSSNVSASTSPKKPNLDLEFTLGQPL 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90639g00027 395 MobiDBLite consensus disorder prediction 362 395 - -
Stsc90639g00027 395 Gene3D - 213 270 - -
Stsc90639g00027 395 MobiDBLite consensus disorder prediction 1 33 - -
Stsc90639g00027 395 FunFam Myb family transcription factor 212 270 - -
Stsc90639g00027 395 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 8 394 IPR044847 GO:0000976|GO:0006355|GO:0010158
Stsc90639g00027 395 MobiDBLite consensus disorder prediction 364 384 - -
Stsc90639g00027 395 MobiDBLite consensus disorder prediction 11 33 - -
Stsc90639g00027 395 MobiDBLite consensus disorder prediction 272 321 - -
Stsc90639g00027 395 MobiDBLite consensus disorder prediction 71 104 - -
Stsc90639g00027 395 NCBIfam myb-like DNA-binding domain, SHAQKYF class 214 267 IPR006447 GO:0003677
Stsc90639g00027 395 SUPERFAMILY Homeodomain-like 211 267 IPR009057 -
Stsc90639g00027 395 Pfam Myb-like DNA-binding domain 215 266 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90639g00027 Stsc-Chr90639 204839 210162 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90639g00027 135 394 G2-like Transcription Factor Family AT4G17695 42.553 5.20e-51 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Stsc90639g00027 Myb_DNA-binding 1.9e-05 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90639g00027 - - aprc:113868756 432.95