Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90639g00018 ATGAGCTTTCAGGATATCGAGGCCGGCCGGCCGTTCGCTTCTCGCCGGGGACACATCAACGGCAAGCAAGACCCCACTCAAGCGGTGGCTGCCGGAATTTTCCAGATCAACACCGCCGTCTCCACCTTTCAGAGGCTTGTTAACACCCTCGGAACCCCCAAAGACACCCCCGAGCTCCGCGAGAAGCTGCACAAGACAAGGCTGCACATTGGACAATTGGTGAAGGACACTTCAGCGAAGCTTAAGCAAGCTAGTGAAATTGATCACCAATCTGATATCAATGCAAGCAAGAAGATAGCAGATGCTAAACTGGCAAAAGATTTTCAGGCAGTGTTGAAAGAATTTCAGAAGGCACAACGTCTTGCAGCAGAGAGGGAAACAGCTTACACCCCATTTGTTCCACAAGCAGCTCCATCCAGCTATACAGCTAATGAAGTAGATGCTAATTCTGGTAAGGCTCCAGAACAGCGTGCCCTTCTTGTGGAATCCAGAAGGCAGGAGGTCTTGTTTTTGGATAATGAGATTGCCTTCAATGAGGCTATCATTGAAGAAAGAGAGCAAGGCATTCAAGAAATTCAGCAGCAAATTGGTGAAGTAAATGAAATTTTTAAAGATCTTGCTGTGCTTGTGCATGAGCAAGGAGCTATGATTGATGATATTGGGTCCAACATTGAGCATTCCCATGCAGCAACTGCACAAGCAAGATCTCAACTTGCTAAAGCTTCAAAGACCCAAAGATCAAATTCTTCTTTGACATGCTTGCTTTTGGTGATATTTGGTATTGTACTTCTAATCGTCATCATTGTTCTGGCTGCTTAG 819 0.4603 MSFQDIEAGRPFASRRGHINGKQDPTQAVAAGIFQINTAVSTFQRLVNTLGTPKDTPELREKLHKTRLHIGQLVKDTSAKLKQASEIDHQSDINASKKIADAKLAKDFQAVLKEFQKAQRLAAERETAYTPFVPQAAPSSYTANEVDANSGKAPEQRALLVESRRQEVLFLDNEIAFNEAIIEEREQGIQEIQQQIGEVNEIFKDLAVLVHEQGAMIDDIGSNIEHSHAATAQARSQLAKASKTQRSNSSLTCLLLVIFGIVLLIVIIVLAA 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90639g00018 272 CDD SynN 23 148 IPR006011 GO:0016020
Stsc90639g00018 272 Pfam SNARE domain 216 267 IPR000727 -
Stsc90639g00018 272 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 179 241 IPR000727 -
Stsc90639g00018 272 FunFam Syntaxin-22 like 20 133 - -
Stsc90639g00018 272 SMART tSNARE_6 174 241 IPR000727 -
Stsc90639g00018 272 Pfam Syntaxin-like protein 30 129 IPR006011 GO:0016020
Stsc90639g00018 272 SUPERFAMILY t-snare proteins 23 234 IPR010989 GO:0016020|GO:0016192
Stsc90639g00018 272 ProSitePatterns Syntaxin / epimorphin family signature. 185 224 IPR006012 GO:0005484|GO:0006886|GO:0016020
Stsc90639g00018 272 PANTHER SYNTAXIN 26 264 IPR045242 -
Stsc90639g00018 272 Gene3D - 20 133 - -
Stsc90639g00018 272 Gene3D - 173 272 - -
Stsc90639g00018 272 SMART SynN_4 15 127 IPR006011 GO:0016020
Stsc90639g00018 272 MobiDBLite consensus disorder prediction 1 23 - -
Stsc90639g00018 272 FunFam Syntaxin-22 like 172 272 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90639g00018 Stsc-Chr90639 86020 89490 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90639g00018 1 260 SNARE and Associated Proteins AT5G46860 78.927 3.27e-148 414
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90639g00018 - - gmx:547656 416.772