Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90639g00014 ATGGATGCGAGTACTAGCGGTGGAGACGGCGGCGGCGGAGGAACCTCTAACGGTGCCACACCGGCGCCGGCACCGATTCCGAACGCGAACGCACCGCCGCCGTTCCTGAGCAAGACGTACGACATGGTGGACGACCCGTCAACGGACGCAGTCGTGTCGTGGAGCGCTACGAACAATAGCTTTGTGGTTTGGAACCCACCGGAATTCGCCAGAGACCTTTTGCCGAAATACTTCAAGCACAATAACTTTTCCAGCTTCGTTAGGCAGCTCAACACTTATGGTTTTAGGAAGGTGGATCCAGATCGATGGGAATTTGCAAATGAGGGCTTTTTGAGGGGTCAAAAGCACTTGCTTAGGAATATAACACGAAGAAAACCTGCCCATGGTCATAATCATCAACAATCTCAGCAATCACATGTACAAAATTCGTCAGTAGGGGCATGTGTAGAAGTTGGTAAGTTTGGGCTCGAGGAAGAGGTTGAGAGGCTTAAAAGAGATAAAAATGTGCTCATGCAGGAACTTGTCAGGCTGAAACAGCAACAACAGACCACTGATGGCCAGCTGCAAGCAATGGTTCAACGCCTTCAGGGCATGGAGCAAAGACAACAACAAATGATGTCATTCCTTGCTAAAGCTGTTCAGAGCCCTGGCTTCTTTGCTCAGTTTGTACAACAGCAAAATGAGAATAATAGGCGTATAACTGAAGTCAACAAAAAGCGCCGGCTCAAGCAAGAAGGTATTGCTGAAGCTGACAGTGCTTCTGCTCCTGATGGGCAAATTGTTAGATATCAACCTCCAATTAACGATTCAGCAAAAGCAATGCTCAGACAGATCATGAAATGGGATACTTCTCGTGCAGAATCTTTTAGTAAAAACCCTGATAATTACTTGATTGGTGATCGATCGTCATCATCATCTGGTGCAATGGACAGTGGCAGCTCTTCAAGCTGGACCTCTGGTGTAACACTTCAGGAGGTCCCTCCAACTTCAGTGCAGTCTTCTCATATTCCAATTACGCCAGGGGCTTCAGGGCATGTACCCTCAATTGCCAAACGTGAAATTCAATCTTTACCGCAAGCTGGAGCTCCTGAAAAGGATTCAAAGGATGGAGCATCTGACTTACCTTCTATCCATGTTCCTCAAGCAGATGTCCTCATGCCTGATCTTGCACCAATAGATGAAATAGAGTCAGGAAGTATGCTTGGTATTCCTGAAGATAATTATATGGCTCCTGAAGCTGGTGATGAGGGATTCATGGATCCTGATTCATTGGGGGTTAGTGGATCATTTCCCCTTGATTTTGAAGGAATTTCACCTGATGCAGACATTGACGACTTGTTAGGAAATCCTTCTATTTGGGATGATCTTTTGCAAACCCCAGCACAAGAGGATACTGAGACTGATGTTGAAGTTTCCAAAGATGATGAGGTGCAACCAGCTGAAAATGGTTGGGATAAAACTCAACATTTGGATCAACTAACAAAGCAGATGGGTCATCTTTCTTCTGAGACAAAATAG 1518 0.4598 MDASTSGGDGGGGGTSNGATPAPAPIPNANAPPPFLSKTYDMVDDPSTDAVVSWSATNNSFVVWNPPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLRNITRRKPAHGHNHQQSQQSHVQNSSVGACVEVGKFGLEEEVERLKRDKNVLMQELVRLKQQQQTTDGQLQAMVQRLQGMEQRQQQMMSFLAKAVQSPGFFAQFVQQQNENNRRITEVNKKRRLKQEGIAEADSASAPDGQIVRYQPPINDSAKAMLRQIMKWDTSRAESFSKNPDNYLIGDRSSSSSGAMDSGSSSSWTSGVTLQEVPPTSVQSSHIPITPGASGHVPSIAKREIQSLPQAGAPEKDSKDGASDLPSIHVPQADVLMPDLAPIDEIESGSMLGIPEDNYMAPEAGDEGFMDPDSLGVSGSFPLDFEGISPDADIDDLLGNPSIWDDLLQTPAQEDTETDVEVSKDDEVQPAENGWDKTQHLDQLTKQMGHLSSETK 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90639g00014 505 MobiDBLite consensus disorder prediction 289 339 - -
Stsc90639g00014 505 SUPERFAMILY "Winged helix" DNA-binding domain 30 124 IPR036390 -
Stsc90639g00014 505 FunFam Heat shock transcription factor 1 28 125 - -
Stsc90639g00014 505 Gene3D - 28 125 IPR036388 -
Stsc90639g00014 505 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 28 300 IPR027725 -
Stsc90639g00014 505 Coils Coil 490 505 - -
Stsc90639g00014 505 MobiDBLite consensus disorder prediction 485 505 - -
Stsc90639g00014 505 MobiDBLite consensus disorder prediction 458 505 - -
Stsc90639g00014 505 MobiDBLite consensus disorder prediction 245 264 - -
Stsc90639g00014 505 ProSitePatterns HSF-type DNA-binding domain signature. 74 98 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc90639g00014 505 MobiDBLite consensus disorder prediction 1 33 - -
Stsc90639g00014 505 PRINTS Heat shock factor (HSF) domain signature 86 98 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc90639g00014 505 PRINTS Heat shock factor (HSF) domain signature 73 85 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc90639g00014 505 PRINTS Heat shock factor (HSF) domain signature 35 58 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc90639g00014 505 MobiDBLite consensus disorder prediction 289 346 - -
Stsc90639g00014 505 Pfam HSF-type DNA-binding 35 124 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc90639g00014 505 Coils Coil 153 180 - -
Stsc90639g00014 505 SMART hsfneu3 31 124 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90639g00014 Stsc-Chr90639 68767 72745 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90639g00014 1 504 HSF AT1G32330 53.244 1.48e-168 483
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Stsc90639g00014 HSF_DNA-bind 4e-33 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90639g00014 K09419 - gmx:100815121 701.049