Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90638g00048 ATGGATGAACAACAAAACGGCATGGATTGTTCTTCCATTTGCAGGGATACACATTTTCAGCATCCAATTAGAACCAAGGCTTGTGAGGCTCTTTCTCAGCTTCCTTTTGTAATGTCTCTCTATTCTGGTGTCCATGGAGAGGTTGCAATATCGCAACAGCCAAAATGGCTTAGTCATGGAGAGGAAATTGGAACACAAGTTTTGATCCCTGTTGTTGGTGGTCTTATTGAGCTCTTCACAGCAAAGCTTGTTCCAAAAGACAATAACATCCTAGAGTTCATAAGAGCACATTGCTATCTTTCATTGAAGCAAGAAGCTATATCTGCACAGCACCACACCGATGGGAACTACAATGAAAATCTGTCATCAGAAGAACAATACACACAGAGCTGGCCACAACCTGCATCAACTTTAACTCATGATGTCCATCTTCTTGCAGCAAATTGGTGCAAATCGGCCGGTCCTTACATTGAAGAACCCTCCAGTGGATCTAATCCTTCAAGCGAATACACATCATTGGATTCCAAATTTGTTTGCTTGACTCACGATGAATATCTGGGTGAATCGGATAAAATATCACCTACCTGTGAAACTAAAAGGCCTACGTACAATGAAGCTTCAGGAAAGCAGCAAGGAACTTTGAGTTCCTATTGTAGCAATGGCAAAATAAATAAAACAAAACCGGTCAGGGTGCCTCCAAAGAAAGGTTACCATGCTAAAAATCTTGCCACAGAGAGGAGAAGGAGAAACAAGATAAAAAATGGCCTTTTCACTTTAAGGTCTCTAGTCCCAAAGATTACCAAGATGGATAGAGCATCAATTCTTGCAGACGCAATTGACTACATAAAGGAACTGCATGGACAAGTTGAAGATCTAAAAGATGAGCTCAGGGCTTTGGAAGTAGAGGACTGCGAGAAGAACACATTGCAATCGATTATGCCAACGAGTAAAGAACAAGGAGGAACTGGAACTCTCCTTACTGAGCTCAACCAAAGTTCTTCTAATTCCACTAAACGTATTGAGATGAAGATGCAAACAGAAGTTAATCAGATAAGCAGGACTGAGTTATTGATTAAGGTATTCTGTGAGCAGAAGCCAGGTGGGTTTTCAAGGTTGATGGAAGCTATAAATTCGTTTGGATTTCAGGTAGAAAATGCCAATATGACCACAATTGACGGAAAGGTTCAGATCGTTCTAACAGTTGAGGCAACCAAGGAGGGTATTCACCCAACTAAGCTGAAGAATTTTTTGACAGAGCAAACAGTTTGA 1269 0.4098 MDEQQNGMDCSSICRDTHFQHPIRTKACEALSQLPFVMSLYSGVHGEVAISQQPKWLSHGEEIGTQVLIPVVGGLIELFTAKLVPKDNNILEFIRAHCYLSLKQEAISAQHHTDGNYNENLSSEEQYTQSWPQPASTLTHDVHLLAANWCKSAGPYIEEPSSGSNPSSEYTSLDSKFVCLTHDEYLGESDKISPTCETKRPTYNEASGKQQGTLSSYCSNGKINKTKPVRVPPKKGYHAKNLATERRRRNKIKNGLFTLRSLVPKITKMDRASILADAIDYIKELHGQVEDLKDELRALEVEDCEKNTLQSIMPTSKEQGGTGTLLTELNQSSSNSTKRIEMKMQTEVNQISRTELLIKVFCEQKPGGFSRLMEAINSFGFQVENANMTTIDGKVQIVLTVEATKEGIHPTKLKNFLTEQTV 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90638g00048 422 Pfam Helix-loop-helix DNA-binding domain 243 285 IPR011598 GO:0046983
Stsc90638g00048 422 SUPERFAMILY ACT-like 355 416 IPR045865 -
Stsc90638g00048 422 Gene3D - 231 303 IPR036638 GO:0046983
Stsc90638g00048 422 SMART finulus 242 291 IPR011598 GO:0046983
Stsc90638g00048 422 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 237 303 IPR036638 GO:0046983
Stsc90638g00048 422 Coils Coil 275 302 - -
Stsc90638g00048 422 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 86 418 - -
Stsc90638g00048 422 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 19 96 IPR025610 -
Stsc90638g00048 422 ProSiteProfiles ACT domain profile. 357 422 IPR002912 -
Stsc90638g00048 422 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 236 285 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90638g00048 Stsc-Chr90638 240614 244786 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90638g00048 238 421 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G16910 41.262 2.15e-34 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc90638g00048 bHLH-MYC_N 1e-07 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90638g00048 - - adu:107481133 459.529