Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90638g00047 ATGGCTCACAAAAACGCTGATGATGATGATTCTTCTTCCTCTCCTTCGTCTTCTAATAACACGCCTTCTACTCCTCAAGACAATAATCATAATAACCACACTTCTTCCTTTTCATCTCATGATTTTTTATTTTCCTCTTCTAAAGTCACCAACCACCAAAACAACAATCACCGTAAAGTTGCACCGCCACCGCCACCTCCACCTCCGCCAATTTCTAATGATTCCAATCCCTCACCGCCCTCTCGGAATCCTCCACCAGATCGGTCTTCACCACCATCACCAAAGGCATTTCCGCTGCCTCCACCACCACCTTCTTTAGAAGTGTCGCCTCCACCAGCGACACAGACACAAAACATAACCTCTTCTCCTCCTCCTCCTCCTGATCCAGCAGATAAAGCACCACCTTCTCCTCCTCCTCCTTCTCATTCTCCACCTCCACCAGCTCCTCCTCCTCCTGAGTCGTCATCAGCATTAAGCCCCGTCCGAAGTAGCCCGTCCTCTAATAACAAGCAATCATTTGAGACGGTTTCTTCAGCAGCGAGGTTTGGTAACAAAGGGACAAGTAGCAGCGATGGTGGAAAAGCAAGCACCGATATAGGAAAATATGTTGGGTATACCCTAGCTGCTGTTTTCTTCTTGGCCTTGGTTGCCGTAACTTTCATCATGTTCAGAAAGAAGAAATCAAGAGCGGATGTAGTCTATGTTACACCCTATATACCTCCCCACCATCATCTTCCCCTTCACCTTAAACCAGGTATTGATAGAATTTACTATGGACATGGTGGTCTTGTCAATAATGGTCCAATGTTATCTCCCAATAATAGAAGCAACCGTGGAAGTGCCAGAAATCTTGGAAGCATAAGAATTATATCATCTTCATCAGATTTAGGGCAACAGGTGAACTTTCCAGTAGCCTTTAGCTACGAGGAGATCTTGGAGGTAACCAATTCATTCTCTTATGAAAACGTCATAGGTGAAGGAGGGTTTGGCCATGTTTACAAAGGGACGCTGCCGGACGGAAAGGTGGTGGCCGTTAAGAAGCTAAAGGTTGGGAGCGTGCAGGGGGAAAGGGAATTCAGGGCTGAAGTGGACATCATCAGCCGTGTCCATCACCGGCATTTGGTATCTTTAGTTGGTTATTGTATTTGTGAGGAGGAAAGATTGCTCGTCTATGAGTATGTTCCTAATGGGACACTCCATCACCACTTGCATGGAAGTGGAATGCCAGTGCTGACGTGGGACAAGAGGTGCAAGATAGCTATTGGTGCTGCAAAGGGCTTGGCATATCTGCATGAGGAATGCAGCCAAAAGATTATTCACAGAGATATTAAATCAGCAAACATACTTTTGGATGATACTTTCGAGGCTCAGGTTGCAGATTTTGGACTTGCAAGGCTAACTGATACTACTGCAAGTCATGTATCAACTAGGGTTGTGGGGACCTTTGGGTACATGGCTCCAGAGTATGCAACAAGTGGGAAATTAACTGATAGATCAGATGTTTTCTCATTTGGGGTTGTCCTCCTTGAGCTTCTAACAGGAAGGAAACCAGTTGATGACTCTCAACCTTTGGGAGATGAGAGTTTGGTTGAATGGGCTCGTCCGCATCTCCTTCACGCAATGGAGACACATGACTGTAGTGTGCTAGTAGATCCAAGACTTCAAAATCAATTTGTGGAGGCTGAAATGTTCAGAATGATTGAGGCCGCTGCGGCTTGTGTTCGCCACTCTGCTCCTAAGCGGCCTCGAATGGTTCAGGTTGTAAGAGCTTTAGATAATGGAGTCGAAATATCTGATCTATCTAATGGGGTGAAATATGGTCACAGTACTACCTATGATTCAAATCAGTACGATAGAGACATTATGATGTTAATGGCCAATGGAAGTTATGGCGGTGACTCTGATTTCTATAGTAAAGAATGCAGTACCTCAAGAGAAATGACTACTTGTGGATCCCAAAATGGATCGAGGCCAAGTAGTTCTAGTAGTGAGTTAGAATCCATAGCACTCAACAAGCATAGCAGAACTTCTTCGTAG 2037 0.4516 MAHKNADDDDSSSSPSSSNNTPSTPQDNNHNNHTSSFSSHDFLFSSSKVTNHQNNNHRKVAPPPPPPPPPISNDSNPSPPSRNPPPDRSSPPSPKAFPLPPPPPSLEVSPPPATQTQNITSSPPPPPDPADKAPPSPPPPSHSPPPPAPPPPESSSALSPVRSSPSSNNKQSFETVSSAARFGNKGTSSSDGGKASTDIGKYVGYTLAAVFFLALVAVTFIMFRKKKSRADVVYVTPYIPPHHHLPLHLKPGIDRIYYGHGGLVNNGPMLSPNNRSNRGSARNLGSIRIISSSSDLGQQVNFPVAFSYEEILEVTNSFSYENVIGEGGFGHVYKGTLPDGKVVAVKKLKVGSVQGEREFRAEVDIISRVHHRHLVSLVGYCICEEERLLVYEYVPNGTLHHHLHGSGMPVLTWDKRCKIAIGAAKGLAYLHEECSQKIIHRDIKSANILLDDTFEAQVADFGLARLTDTTASHVSTRVVGTFGYMAPEYATSGKLTDRSDVFSFGVVLLELLTGRKPVDDSQPLGDESLVEWARPHLLHAMETHDCSVLVDPRLQNQFVEAEMFRMIEAAAACVRHSAPKRPRMVQVVRALDNGVEISDLSNGVKYGHSTTYDSNQYDRDIMMLMANGSYGGDSDFYSKECSTSREMTTCGSQNGSRPSSSSSELESIALNKHSRTSS 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90638g00047 678 FunFam proline-rich receptor-like protein kinase PERK8 394 606 - -
Stsc90638g00047 678 MobiDBLite consensus disorder prediction 1 196 - -
Stsc90638g00047 678 MobiDBLite consensus disorder prediction 117 156 - -
Stsc90638g00047 678 MobiDBLite consensus disorder prediction 157 195 - -
Stsc90638g00047 678 ProSiteProfiles Protein kinase domain profile. 318 595 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90638g00047 678 MobiDBLite consensus disorder prediction 11 58 - -
Stsc90638g00047 678 Gene3D Phosphorylase Kinase; domain 1 287 393 - -
Stsc90638g00047 678 SMART serkin_6 318 559 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90638g00047 678 PRINTS Proline rich extensin signature 79 95 - -
Stsc90638g00047 678 PRINTS Proline rich extensin signature 119 144 - -
Stsc90638g00047 678 PRINTS Proline rich extensin signature 58 79 - -
Stsc90638g00047 678 PRINTS Proline rich extensin signature 100 117 - -
Stsc90638g00047 678 CDD STKc_IRAK 324 593 - -
Stsc90638g00047 678 MobiDBLite consensus disorder prediction 646 678 - -
Stsc90638g00047 678 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 211 625 IPR047117 -
Stsc90638g00047 678 SUPERFAMILY Protein kinase-like (PK-like) 297 591 IPR011009 -
Stsc90638g00047 678 Gene3D Transferase(Phosphotransferase) domain 1 394 606 - -
Stsc90638g00047 678 FunFam Proline-rich receptor-like protein kinase PERK8 291 393 - -
Stsc90638g00047 678 ProSitePatterns Protein kinases ATP-binding region signature. 324 347 IPR017441 GO:0005524
Stsc90638g00047 678 Pfam Protein tyrosine and serine/threonine kinase 320 591 IPR001245 GO:0004672|GO:0006468
Stsc90638g00047 678 MobiDBLite consensus disorder prediction 59 110 - -
Stsc90638g00047 678 ProSitePatterns Serine/Threonine protein kinases active-site signature. 438 450 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90638g00047 Stsc-Chr90638 237283 240227 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90638g00047 203 643 Trihelix Transcription Factor Family AT1G70460 60.000 4.06e-180 527
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Stsc90638g00047 PK_Tyr_Ser-Thr 5.7e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90638g00047 - - ahf:112791792 785.408