Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90638g00031 ATGGCTTCTTCTTCAATGAGGATTTCCAGGCTCCTTTCTCGCTCTTTTTCTTCCTCCTCCTCTCTTTTTTCTCGAGGTGGGAAGGGTTACCTTGGTACAGGGATCAGCAAATATAGCACTGCCACTGCCATTGAAGAAGAACCAATCAAACCAGCAGTGCAAGTAGAACACACTCAACTCCTAATTGGTGGGAAATTCGTTGATGCTCTTTCTGGTAAAACTTTCCCAACCTTGGACCCAAGAACAGGGGAAGTGATTGCTCATGTTGCTGAGGGTCACTCTGAAGATGTTGATAGAGCAGTTGCAGCTGCAAGAAAGGCATTTGATCAAGGACCATGGCCTAGGATGACAGCCTATGAGAGGCAAAGGGTATTATTGAGAGCAGCAGATCTCCTTGAGAAGCACAATGATGAGCTTGCAGCACTTGAGACCTGGGATAATGGGAAGCCATATGAACAAGCTGCTCAGATTGAAGTCCCAATGCTTGTTCGCCTTTTCCGATACTATGCTGGTTGGGCAGATAAGATCCATGGTATGACAGTTCCGGCTGATGGGCAATATCATGTGCAAACATTGCACGAACCGATCGNNNNNNNNNNCCAGATCATTCCCTGGAATTTTCCTCTTCTCATGTTTGCTTGGAAGGTTGGACCGGCATTGGCTTGTGGCAATACTATTGTTCTCAAAACCGCGGAGCAGACACCATTGTCAGCTTTGTATGCAGCAAAACTATTTCATGAGGCTGGACTTCCTGAAGGTGTTTTGAACGTGGTATCGGGCTTCGGTCCCACTGCTGGTGCTGCTCTTGCAAGTCACATGGATGTGGATAAGCTTGCCTTTACTGGTTCTACCGATACCGGGAAAGTTGTCCTTGAGCTAGCAGCTAGAAGCAATCTTAAGCCTGTAACTCTGGAGCTTGGTGGAAAATCTCCTTTTATTGTATGTGAAGATGCCGATGTAGATCAGGCTGTTGAGCTTGCACACTTTGCCTTATTCTTTAATCAGGGACAATGTTGCTGTGCTGGTTCCAGGACATATGTACATGAACGTGTATATGATGAGTTTGTCGAGAAAGCAAAGGCTCGTGCTTTGAAACGTATTGTTGGTGATCCATTCAAGAGTGGAATAGAGCAAGGTCCTCAGATCGATTCAGAACAATTTGAGAAGATACTGAAGTATATCAGATCCGGTGTTCAAAGTGGAGCTACACTTGAAACCGGGGGAGATAGACTTGGCAGCAAGGGCTTCTATGTTCAGCCTACCGTCTTCTCCAATGTTCAGGATGGCATGCTGATTGCAAAGGAAGAAATATTTGGCCCAGTGCAATCCATACTAAAATTCAGGGACCTTGATGAGGTTATTCAAAGGTCGAACAACACGCGCTATGGACTGGCAGCAGGGGTGTTCACGAAGAACATAGACACGGCGAACACCTTGACGAGAGCATTGAGAGTTGGAACAGTTTGGGTGAACTGCTTTGACACATTTGATGCAGCGATTCCATTTGGTGGTTACAAGATGAGTGGACAAGGAAGGGAAAAGGGTGAGTATAGCCTCAAGAATTACTTGCAAGTCAAGGCAGTTGTTACCCCTTTGAAGAACCCTGCATGGCTTTAG 1617 0.4583 MASSSMRISRLLSRSFSSSSSLFSRGGKGYLGTGISKYSTATAIEEEPIKPAVQVEHTQLLIGGKFVDALSGKTFPTLDPRTGEVIAHVAEGHSEDVDRAVAAARKAFDQGPWPRMTAYERQRVLLRAADLLEKHNDELAALETWDNGKPYEQAAQIEVPMLVRLFRYYAGWADKIHGMTVPADGQYHVQTLHEPIXXXXQIIPWNFPLLMFAWKVGPALACGNTIVLKTAEQTPLSALYAAKLFHEAGLPEGVLNVVSGFGPTAGAALASHMDVDKLAFTGSTDTGKVVLELAARSNLKPVTLELGGKSPFIVCEDADVDQAVELAHFALFFNQGQCCCAGSRTYVHERVYDEFVEKAKARALKRIVGDPFKSGIEQGPQIDSEQFEKILKYIRSGVQSGATLETGGDRLGSKGFYVQPTVFSNVQDGMLIAKEEIFGPVQSILKFRDLDEVIQRSNNTRYGLAAGVFTKNIDTANTLTRALRVGTVWVNCFDTFDAAIPFGGYKMSGQGREKGEYSLKNYLQVKAVVTPLKNPAWL 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90638g00031 538 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 304 311 IPR029510 GO:0016491
Stsc90638g00031 538 FunFam Mitochondrial aldehyde dehydrogenase 2 310 499 - -
Stsc90638g00031 538 CDD ALDH_F2BC 55 530 - -
Stsc90638g00031 538 FunFam ALD5p Mitochondrial aldehyde dehydrogenase 62 323 - -
Stsc90638g00031 538 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 72 528 IPR016162 GO:0016491
Stsc90638g00031 538 SUPERFAMILY ALDH-like 53 532 IPR016161 GO:0016491
Stsc90638g00031 538 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 310 499 IPR016163 GO:0016620
Stsc90638g00031 538 FunFam Aldehyde dehydrogenase, putative 500 526 - -
Stsc90638g00031 538 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 332 343 IPR016160 GO:0016491
Stsc90638g00031 538 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 42 528 - -
Stsc90638g00031 538 Pfam Aldehyde dehydrogenase family 68 528 IPR015590 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90638g00031 Stsc-Chr90638 147583 151272 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90638g00031 4 538 Aldehyde Dehydrogenase Gene Family AT3G48000 76.723 0.0 884
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90638g00031 K00128 - gmx:100777399 957.977