Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90638g00019 ATGAACCCTGCAGTGATTTTCATCATAGTGATCTTAGCTATTGTGTTCTTGATCTCTGGTATCATTCAATTGGTTGTTAGATTCCTCATGAGGCAAAGGCCCTCCTCTTCATCAATTATTCAATCAAATAGGTTCCCTGACATGTCTGAACCTGATGCATACCAGAGACAGTTGCAACAACTCTTCCACCTCCATGATTCAGGCTTGGATCAGGCCTTCATAGATGCTCTCCCAGTTTTCTACTACAGAGAGATCATAGGTTTGAAAGAACCATTTGATTGTGCAGTTTGCTTATGTCAATTCTCAGAAGAAGACATGCTGAGATTGCTTCCAATTTGTAACCATGCTTTTCACATTGACTGCATAGATACATGGCTCATGTCTAATTCAACTTGTCCCCTTTGTCGAGGGAGCCTGTATGATCCAGGGTTTGCATTTGACAACCCAGTTTATGAATTTGAGGGTCCAATAAGGGAAGATGGGGATTCAGGGAGTGTTGTTGGTGTTGGTGAGGCTGGTTCTGCTAACAACAAACATGGAGAAAGCCACATAATGAGTGGGAAAAGGGTGTTCTCTGTTAGGCTTGGGAAATTCAAAAGCTCAAATAATGGTGAAGGTGTGGTGATGGGAAGAGGAGAAGGAGAGAGTAGTGGTAGTACTAGCAATTTTGATGTGAGGAGGTGCTTCTCAATGGGGTCTTTTCAGTATGTGGTTGCTGATTCAGATTTGCAAGTGGCTTTATGCCCTGATACCAGTGGCAGTATGAGAAAATTGAAAGGAAGATTAGCACCACTGTATGGGAATTCTTCGTCCATTGATGGGGATATTGAGGGGAAAAAGATCAACATTGCTAGGAAAGGTGAGAGCTTTTCTGTTTCAAAGATCTGGCTATGGTCTAGGAAGGATAAGGTATCAAATTCTACACCAGAAACTCATTTGGGTAATTCTCATGTCACTGCAACTTTGCATGGATGA 975 0.4215 MNPAVIFIIVILAIVFLISGIIQLVVRFLMRQRPSSSSIIQSNRFPDMSEPDAYQRQLQQLFHLHDSGLDQAFIDALPVFYYREIIGLKEPFDCAVCLCQFSEEDMLRLLPICNHAFHIDCIDTWLMSNSTCPLCRGSLYDPGFAFDNPVYEFEGPIREDGDSGSVVGVGEAGSANNKHGESHIMSGKRVFSVRLGKFKSSNNGEGVVMGRGEGESSGSTSNFDVRRCFSMGSFQYVVADSDLQVALCPDTSGSMRKLKGRLAPLYGNSSSIDGDIEGKKINIARKGESFSVSKIWLWSRKDKVSNSTPETHLGNSHVTATLHG 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90638g00019 324 MobiDBLite consensus disorder prediction 305 324 - -
Stsc90638g00019 324 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 55 141 IPR013083 -
Stsc90638g00019 324 FunFam RING-H2 finger protein ATL46 56 141 - -
Stsc90638g00019 324 SUPERFAMILY RING/U-box 73 142 - -
Stsc90638g00019 324 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 1 296 - -
Stsc90638g00019 324 Pfam Ring finger domain 93 136 IPR001841 -
Stsc90638g00019 324 CDD RING-H2_EL5-like 93 136 - -
Stsc90638g00019 324 ProSiteProfiles Zinc finger RING-type profile. 94 136 IPR001841 -
Stsc90638g00019 324 SMART ring_2 94 135 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90638g00019 Stsc-Chr90638 85047 87051 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90638g00019 20 303 C3H Transcription Factor Family AT2G18650 39.103 3.35e-59 194
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90638g00019 - - gmx:100818135 436.802