Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90638g00017 ATGGCTGTTGATGAAGTAGGTAGTAGCTCTGAGTGGAGCTTTGAGCAGGATAAAGCGTTTGAGGATGCCTTGGGTACTTACCCTGAGGACGAACCAGATCGATGGGAGAAGATTGCGGCCGATGTAACAGGGAAGACTTTGGAGGAGGTTAAACAGCACTATGAGCTTCTGGTTGATGATGTCAACTTAATTGAATCTGGGCGATTACCTCTACCGGCTTATAATTCTACTTCGGAAGGTTCAACAGGCAATGCTAGTGATGAAGGAGCTGGCAAGAAGGGTGGCCAACCTTGGAATTCGAACAGTGAGTCTAATAATGGATCTAAGGCTTCAAGATCAGATCAGGAACGGCGCAAGGGTATTGCTTGGACAGAAGATGAACACAGGTTATTTCTTCTTGGATTGGAGAAGTACGGAAAGGGTGACTGGCGAAGTATATCAAGGAATTTCGTGGTAACAAGAACTCCTACACAAGTAGCGAGCCACGCCCAAAAATATTTCATTCGATTGAACTCGATGAACAAGGATCGAAGGCGATCAAGCATACATGATATCACCAGCGTGAACAATGGAGACGTTTCGGCACCTCAAGGACCAATCACCGGTCAAACGAATGGTTCCGCTGGAAACTCGGCGGTAAAATCTCCAAAACAAGGCCCTCCAACCCCAACCGGTCCTCCAACTGTAGGAATGTTTGCTGCTCCCACCATCGGACAACCTATAGGAGGAGGACCCCTTGTATCTGCAGTTGGCACTCCAGTGAATCTTCCTCCCCCGGCACACATGGCTTACGGTGTCCGAGCTCCGGTTCCTGGGGCACCGATGAACATGGGTCCTGTGCCATACCCCATGCCACCAGCATCTGCTCATAGGTGA 876 0.4932 MAVDEVGSSSEWSFEQDKAFEDALGTYPEDEPDRWEKIAADVTGKTLEEVKQHYELLVDDVNLIESGRLPLPAYNSTSEGSTGNASDEGAGKKGGQPWNSNSESNNGSKASRSDQERRKGIAWTEDEHRLFLLGLEKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKDRRRSSIHDITSVNNGDVSAPQGPITGQTNGSAGNSAVKSPKQGPPTPTGPPTVGMFAAPTIGQPIGGGPLVSAVGTPVNLPPPAHMAYGVRAPVPGAPMNMGPVPYPMPPASAHR 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90638g00017 291 MobiDBLite consensus disorder prediction 15 35 - -
Stsc90638g00017 291 Gene3D - 121 173 - -
Stsc90638g00017 291 CDD SANT 11 58 IPR001005 -
Stsc90638g00017 291 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 114 171 IPR017930 -
Stsc90638g00017 291 NCBIfam myb-like DNA-binding domain, SHAQKYF class 119 169 IPR006447 GO:0003677
Stsc90638g00017 291 FunFam Transcription factor SRM1 4 71 - -
Stsc90638g00017 291 CDD SANT 122 167 IPR001005 -
Stsc90638g00017 291 MobiDBLite consensus disorder prediction 177 228 - -
Stsc90638g00017 291 ProSiteProfiles SANT domain profile. 123 171 IPR017884 -
Stsc90638g00017 291 PANTHER TRANSCRIPTION FACTOR KUA1 8 285 - -
Stsc90638g00017 291 Gene3D - 10 57 - -
Stsc90638g00017 291 ProSiteProfiles Myb-like domain profile. 115 167 IPR001005 -
Stsc90638g00017 291 SUPERFAMILY Homeodomain-like 117 172 IPR009057 -
Stsc90638g00017 291 SUPERFAMILY Homeodomain-like 10 66 IPR009057 -
Stsc90638g00017 291 Pfam Myb-like DNA-binding domain 122 167 IPR001005 -
Stsc90638g00017 291 MobiDBLite consensus disorder prediction 73 120 - -
Stsc90638g00017 291 FunFam transcription factor MYB1R1 121 172 - -
Stsc90638g00017 291 ProSiteProfiles Myb-like domain profile. 10 58 IPR001005 -
Stsc90638g00017 291 SMART sant 119 169 IPR001005 -
Stsc90638g00017 291 SMART sant 8 60 IPR001005 -
Stsc90638g00017 291 MobiDBLite consensus disorder prediction 95 109 - -
Stsc90638g00017 291 MobiDBLite consensus disorder prediction 1 35 - -
Stsc90638g00017 291 MobiDBLite consensus disorder prediction 184 218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90638g00017 Stsc-Chr90638 64641 69058 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc90638g00017 Myb_DNA-binding 2.1e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90638g00017 - - gmx:100820272 479.559