Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90638g00004 ATGGCCACCGCGCAGGAGGAGTTAGCAGCAGCAGCATCACAAGCGGAGAAGGGCAAGATGCGGTGGTGGGAGCTTGAGGAGGATGATGCCGAGGACCTCGACTTCCTCCTCCCTCCCAAGCAGGTCATAGGTCCTGATGACAACGGAATCAAGAAGGTAATCGAGTACAAGTTCGACGACCAAGGCAACAAGATCAGGATCACCACCACCACCCGCGTCCGCAAGCTTGCCAACGCCCGCCTCAGTAAGCAGGCCGTCCTCCGCCGTCAATGGCCAAAGTTCGGCGACGCCGCTGACGAGGACGTCGGCAGCCGCCTTACCATGGTCTCCACTGAAGAGATCGTCCTTGAACGCCCCAAGCCCCTAGGTGCGAAATCAGAGGAACCAAAGGCTACTGGAGATTCATTATCTCAAATCAACAAGGGTGCTGTTCTTATGGTGTGTAGAACTTGTGGGAAGAAGGGTGACCATTGGACCTCGCGGTGTCCATACAAGGATCTTGTGCAGCCAACAGAGGGATACGTTGATAGGCCTCCAACATCAGATGGTGCAGCTCCTGCAGCCGGTTCGACCAAGGGAACGTACGTGCCTCCTGGTATGAGGGCAGGTGCCGAGAGGACTGGATCAGATATGCGACAGCGTAGGAACGAGGAGAATTCTGTGAGGGTCACCAATCTCTCGGAGGACACCAGAGAGCCCGATTTGCTGGAGCTTTTCCGCCCGTTTGGTGCTGTGAGCAGAGTCTATGTGGCCATTGATCAAAAAACAGGCACAAGCAGGGGGTTTGGCTTTGTTAACTTTGTGAACAGGGAAGATGCACAAAGAGCTATCAACAAACTGAATGGTTATGGCTACGACAATCTCATCCTAAGAGTTGAATGGGCAACCCCAAGGGCAAATTAG 903 0.5426 MATAQEELAAAASQAEKGKMRWWELEEDDAEDLDFLLPPKQVIGPDDNGIKKVIEYKFDDQGNKIRITTTTRVRKLANARLSKQAVLRRQWPKFGDAADEDVGSRLTMVSTEEIVLERPKPLGAKSEEPKATGDSLSQINKGAVLMVCRTCGKKGDHWTSRCPYKDLVQPTEGYVDRPPTSDGAAPAAGSTKGTYVPPGMRAGAERTGSDMRQRRNEENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAIDQKTGTSRGFGFVNFVNREDAQRAINKLNGYGYDNLILRVEWATPRAN 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90638g00004 300 CDD eIF3G 48 166 IPR024675 -
Stsc90638g00004 300 Gene3D - 186 300 IPR012677 -
Stsc90638g00004 300 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 221 287 IPR000504 GO:0003723
Stsc90638g00004 300 FunFam Eukaryotic translation initiation factor 3 subunit G 183 300 - -
Stsc90638g00004 300 PIRSF Transl_init_eIF-3_RNA-bind 11 300 IPR017334 GO:0003743|GO:0005737|GO:0005852
Stsc90638g00004 300 Pfam Eukaryotic translation initiation factor 3 subunit G 41 167 IPR024675 -
Stsc90638g00004 300 Hamap Eukaryotic translation initiation factor 3 subunit G [EIF3G]. 19 299 IPR017334 GO:0003743|GO:0005737|GO:0005852
Stsc90638g00004 300 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 219 297 IPR000504 GO:0003723
Stsc90638g00004 300 SUPERFAMILY RNA-binding domain, RBD 212 299 IPR035979 GO:0003676
Stsc90638g00004 300 CDD RRM_eIF3G_like 220 295 IPR034240 -
Stsc90638g00004 300 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 26 296 - -
Stsc90638g00004 300 SMART rrm1_1 220 293 IPR000504 GO:0003723
Stsc90638g00004 300 MobiDBLite consensus disorder prediction 176 220 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90638g00004 Stsc-Chr90638 17857 19551 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90638g00004 13 298 Eukaryotic Initiation Factors Gene Family AT3G11400 67.296 4.10e-151 424
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90638g00004 K03248 - gmx:100818725 476.863