Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90637g00067 ATGGAGATGGAGGAGTTGAATTGGAAGAAAAACGGGAGAATGTCAATGATGGAAAGCAGGTACAAGACAGAGGTGTGCAGGAGATTCATGGCGGGGACTTGTGGGCTTGGCTCAAAATGCAGGTATGCTCATGGCGTTTCGGAGCTGAGAGTGAGAGGAGGAGGAGGATGCCCTAGAGTGTGCAGAATATTCTCTGTGTACAGAAACTGCTCTTATGGCCACAAGTGTCGCTTCCTTCATCATCATCCCCAACCACCACCACCACCACCAGCAGAATACACGGCAATGCAAACAGAAACAACTAGTTGTACAAATGCCTCAAGCACCACACTGGAAACTAATGGCAATGAACAACAAGAACCACCACCACAGACACAGAGAGTCAAGTTCATTTTCAAGGATCATCAACTCCAAAAGATCAGTCGCATCTATGCAGATTGGATCTAA 447 0.4698 MEMEELNWKKNGRMSMMESRYKTEVCRRFMAGTCGLGSKCRYAHGVSELRVRGGGGCPRVCRIFSVYRNCSYGHKCRFLHHHPQPPPPPPAEYTAMQTETTSCTNASSTTLETNGNEQQEPPPQTQRVKFIFKDHQLQKISRIYADWI 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90637g00067 148 ProSiteProfiles Zinc finger C3H1-type profile. 60 83 IPR000571 GO:0046872
Stsc90637g00067 148 PANTHER CCCH ZINC FINGER/TIS11-RELATED 17 112 IPR045877 GO:0003729
Stsc90637g00067 148 SMART c3hfinal6 56 82 IPR000571 GO:0046872
Stsc90637g00067 148 SMART c3hfinal6 20 46 IPR000571 GO:0046872
Stsc90637g00067 148 MobiDBLite consensus disorder prediction 83 124 - -
Stsc90637g00067 148 SUPERFAMILY CCCH zinc finger 19 51 IPR036855 GO:0046872
Stsc90637g00067 148 FunFam zinc finger CCCH domain-containing protein 15-like 14 52 - -
Stsc90637g00067 148 ProSiteProfiles Zinc finger C3H1-type profile. 20 47 IPR000571 GO:0046872
Stsc90637g00067 148 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 21 45 IPR000571 GO:0046872
Stsc90637g00067 148 MobiDBLite consensus disorder prediction 94 124 - -
Stsc90637g00067 148 Gene3D - 14 51 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90637g00067 Stsc-Chr90637 226116 226902 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90637g00067 22 80 C3H Transcription Factor Family AT1G68200 43.548 1.69e-09 53.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Stsc90637g00067 zf-CCCH 3.9e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90637g00067 K18753 - ahf:112703739 186.422