Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90637g00048 ATGGTGCAATCAAAGAAATTTAGAGGTGTCAGGCAACGCCACTGGGGCTCTTGGGTTTCTGAGATTCGCCACCCATTATTGAAAAGGAGGGTGTGGCTTGGGACATTTGAAACTGCTGAAGAAGCAGCAAGAGCATATGATGAAGCAGCCATTTTGATGAGTGGAAGGAACGCCAAGACTAACTTCCCCGTTGGAGACAATAATAATAATATCAACAACACTTCCACTGCCACTGCTTCTTCTTCCTCTTCATCTTCTACAACAACATTCTCTGCTGTTCTCAGTGCAAAGCTGAGAAAGTGCTGCAAGTCCCCATCACCTTCACTCACATGCCTCAGGCTGGACACAGAGAATTGCCACATTGGTGTGTGGCAGAAGCGTGCAGGGCCTCGCTCTGAATCCAACTGGATCATGATGGTGGAGTTGGAAAGGAACAACAAGAACAAGAACAACAACACTCTCAGCACCACCGAAGCAGCTTCTTCTTCTTCCTCTTCTGATTCAGAGACCGTGAAGCCAGAGGAAAGCAGCAATGGTGGGTTGGATGAGGAACAGAGGATTGCCCTGCAGATGATAGAAGAGCTTCTCAATAGGAATTAA 600 0.4717 MVQSKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDEAAILMSGRNAKTNFPVGDNNNNINNTSTATASSSSSSSTTTFSAVLSAKLRKCCKSPSPSLTCLRLDTENCHIGVWQKRAGPRSESNWIMMVELERNNKNKNNNTLSTTEAASSSSSSDSETVKPEESSNGGLDEEQRIALQMIEELLNRN 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90637g00048 199 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700|GO:0006355
Stsc90637g00048 199 MobiDBLite consensus disorder prediction 147 175 - -
Stsc90637g00048 199 MobiDBLite consensus disorder prediction 147 186 - -
Stsc90637g00048 199 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700|GO:0006355
Stsc90637g00048 199 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
Stsc90637g00048 199 SUPERFAMILY DNA-binding domain 6 64 IPR016177 GO:0003677
Stsc90637g00048 199 SMART rav1_2 6 69 IPR001471 GO:0003700|GO:0006355
Stsc90637g00048 199 Gene3D AP2/ERF domain 5 64 IPR036955 GO:0003700|GO:0006355
Stsc90637g00048 199 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 3 160 - -
Stsc90637g00048 199 MobiDBLite consensus disorder prediction 63 86 - -
Stsc90637g00048 199 Pfam AP2 domain 6 54 IPR001471 GO:0003700|GO:0006355
Stsc90637g00048 199 CDD AP2 5 64 IPR001471 GO:0003700|GO:0006355
Stsc90637g00048 199 FunFam Ethylene-responsive transcription factor 2 5 64 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90637g00048 Stsc-Chr90637 185429 186130 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90637g00048 1 199 AP2-EREBP Transcription Factor Family AT1G15360 62.857 6.04e-82 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Stsc90637g00048 AP2 8.4e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90637g00048 - - gmx:100796962 264.618