Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90637g00047 ATGGCGCAAATTCTGCTACACGGGACTCTCCATGCCACCATCTATGAGGTGGATAAGCTCAAGACAAGTGGTGGCAATGTTTTCACCAAGCTGGTGCAAAACTTCGAGGAGACAGTTGGTTTTGGAAAAGGAGTTACCAAACTGTATGCAACCATTGATCTGGAGAAAGCACGAGTTGGAAGGACCAGGATTTTAGAAAAAGACCATAGTAATCCCAGATGGTACGAGTCTTTTCACATTTACTGTGCCCACATGGCATCCAACATCATATTCACTGTCAAAGATGACAATCCCATTGGGGCAACCTTAATCGGAAGAGCATACGTACCTGTTGAGGATGTCTTGGATGGTGAGGAGGTAGATAGATGGGTTGAGATATTGGATGAGCACAAGAATCCAATACATGGGAACTCAAAGATTCATGTGAAGCTGCAATTCTTTGATGTCAACAAAGACAAGAACTGGGCACATGGTGTTAGGAGTGCTAAATATCCTGGTGTTCCCTACACTTTCTTCTCACAAAGAAAAGGCTGCAAGGTTTCTCTTTACCAGGATGCTCATGTCCCCGATAACTTTGTCCCCAAAATACCCCTTGCTGGAGGCCAAACTTACCAGCCTCATAGGTGTTGGGAGGATGTGTTTGATGCAATCGAAAAAGCCAGGCATTTGATATACATAACGGGTTGGTCTGTTTACACTGAGATAACATTGGTGAGGGATTCGAGGAGGCCAAAGCCTGGTGGAGACTTAACACTTGGTGAGCTTCTCAAGAAGAAGGCGAATGAGGGTGTCAGGGTCTTGATGCTTGTTTGGGATGACAGGACATCTGTTCCATTGTTGAAAAAAGATGGGTTGATGGCTACTCATGATGAAGAAACTGAGAGGTACTTCCAAGGAACTGAAGTGCACNNNNNNNNNNGTGGAAGCATTATTCAGGATTTGCAAATCTCTACAATGTTTACTCATCACCAGAAGATTGTGGTGGTGGATAGTGATATGCCTAGTGGAGATTCGGGTAAGAGAAGGATAGTGAGCTTTGTTGGGGGTATTGATCTCTGTGATGGAAGATATGACACTCAGTTCCACTCGCTTTTCAGAACCCTGGACACGGCCCACCACGATGATTTTCATCAGCCAAACTTTGCCGGTGCTTCCATCATGAAAGGTGGTCCTAGGGAGCCTTGGCATGACATCCACTCCCGTCTCGAAGGGCCTATTGCGTGGGATGTTCTGTTCAACTTCGAGCAGAGATGGAGGAAGCAAGGTGGAAAGGACTTACTCATTCCTTTGAGAGAGCTTGAAGATGTCGTCATTCCTCCGTCCCCAGTAACATTCCCCGATGATCGCGAGACATGGAATGTTCAATTATTCAGATCAATTGATGGTGGAGCTGCTTTTGGGTTCCCAGAGACTCCTGAAGATGCTGCGAGAGCTGGCCTTGTTAGTGGAAAGGATAACATCATAGACCGTAGCATTCAAGATGCTTATGTCAATGCAATTAGGCGAGCAAAGAATTTCATCTATATTGAAAATCAGTATTTCCTAGGAAGCTGTTTTGGGTGGAGCCCTGATGGCATTAAGCCTGAGGACATTGGCGCATTGCATCTAATCCCAAAGGAGCTTTCACTTAAGATTGTAAGCAAGATCGAAGCCGGGGAGAGGTTCACCGTGTACATTGTGGTTCCAATGTGGCCAGAGGGGTTCCCAGAGAGTGGTTCAGTTCAGGCCATATTGGATTGGCAGAGGAGGACAATGGAGATGATGTACAAGGATATAGTTGACGCACTCAATGCCAAGGGAATTGTGGAAGATCCCAGAAACTATTTGACATTCTTCTGCCTCGGCAACCGTGAGGTCAAGAAGCCAGGGGAATATGAGCCTTCAGAGACACCAGACCCTGATTCTGATTACATCAAAGCACAGGAGAACCGCCGATTCATGATTTATGTCCATGCCAAGATGATGATAGGTAACAAACACTTGGAATCTTGTACATTTTCTTTGGATGATTAG 2013 0.454 MAQILLHGTLHATIYEVDKLKTSGGNVFTKLVQNFEETVGFGKGVTKLYATIDLEKARVGRTRILEKDHSNPRWYESFHIYCAHMASNIIFTVKDDNPIGATLIGRAYVPVEDVLDGEEVDRWVEILDEHKNPIHGNSKIHVKLQFFDVNKDKNWAHGVRSAKYPGVPYTFFSQRKGCKVSLYQDAHVPDNFVPKIPLAGGQTYQPHRCWEDVFDAIEKARHLIYITGWSVYTEITLVRDSRRPKPGGDLTLGELLKKKANEGVRVLMLVWDDRTSVPLLKKDGLMATHDEETERYFQGTEVHXXXXGSIIQDLQISTMFTHHQKIVVVDSDMPSGDSGKRRIVSFVGGIDLCDGRYDTQFHSLFRTLDTAHHDDFHQPNFAGASIMKGGPREPWHDIHSRLEGPIAWDVLFNFEQRWRKQGGKDLLIPLRELEDVVIPPSPVTFPDDRETWNVQLFRSIDGGAAFGFPETPEDAARAGLVSGKDNIIDRSIQDAYVNAIRRAKNFIYIENQYFLGSCFGWSPDGIKPEDIGALHLIPKELSLKIVSKIEAGERFTVYIVVPMWPEGFPESGSVQAILDWQRRTMEMMYKDIVDALNAKGIVEDPRNYLTFFCLGNREVKKPGEYEPSETPDPDSDYIKAQENRRFMIYVHAKMMIGNKHLESCTFSLDD 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90637g00047 670 Pfam Phospholipase D Active site motif 318 356 IPR001736 GO:0003824
Stsc90637g00047 670 Gene3D C2 domain 6 160 IPR035892 -
Stsc90637g00047 670 SUPERFAMILY Phospholipase D/nuclease 439 656 - -
Stsc90637g00047 670 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 318 356 IPR001736 GO:0003824
Stsc90637g00047 670 Gene3D Endonuclease Chain A 469 658 - -
Stsc90637g00047 670 ProSiteProfiles C2 domain profile. 1 124 IPR000008 -
Stsc90637g00047 670 SMART pld_4 318 356 IPR001736 GO:0003824
Stsc90637g00047 670 SUPERFAMILY Phospholipase D/nuclease 150 437 - -
Stsc90637g00047 670 CDD C2_plant_PLD 2 147 - -
Stsc90637g00047 670 SMART C2_3c 9 123 IPR000008 -
Stsc90637g00047 670 Gene3D Endonuclease Chain A 199 433 - -
Stsc90637g00047 670 PANTHER PHOSPHOLIPASE D 4 656 IPR015679 -
Stsc90637g00047 670 FunFam Phospholipase D delta 200 436 - -
Stsc90637g00047 670 Pfam C2 domain 8 126 IPR000008 -
Stsc90637g00047 670 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 6 150 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90637g00047 Stsc-Chr90637 177233 180991 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90637g00047 1 656 Phospholipase D Gene Family (Wang group) AT3G15730 77.477 0.0 1093
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90637g00047 K01115 - gmx:100784434 1207.2