Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90637g00026 ATGTCTACTAGCTGGCGTTCCAGCACTCCCGTTTCAACACCGCCAATCTCAATCCCAATTCCAAATCCCGAGGAGGAGGAGGAGGAGGCTTCTTCATTCTCCACCTCCGTCTTCAACTTCTCCTCCGGAAACCCTAGGATCGAGGAGACCCGAGGCCTCATGCATCTCTTCCCCGACCAAGATCCCCCTTCTTCCCTCCCTTTTGGGCGCAAACCCCTCGTGTGCGTCGTCGGCGTCCCCAATCACATGACCTATGCCGACTTCTGCCAGTTCTGCGGTTCCTTCCTCAGCCACATCCTTGAGATGCGCATTGTCAGAATGGATGGAACCGAAGACCAGTACAGTGTTTTGATCCGCTTCGACGATCAAGACTCTACCGACACCTTCTTTAACCACTACAACGGCCGCCGTTTCTCCTCTCTCGAGGTTGAGGTTTGCCGTGTTCTTTTCACGTTGGATGTGCAGTACACTGGTTCCATCGAACATGCTCAACCATCCAATGCTACCTCCACTGAACAGCCCACATGTCCAGTTTGCCTTGAGCGATTAGATCAAGACACTAGCGGAATCCTCACTACTATATGTAACCATTCTTTCCATTGTTCATGCATTTCAAAATGGGCTGATTCTTCTTGCCCTGTGTGCCGCTATTGCCAACAGCAAGCTGAAAAATCTATATGTTCCGTTTGTCGGACCACTGAGAACCTTTGGATATGTGTTATATGCGGGTTTGTTGGCTGTGGAAGATATAAAGCAGGACATGCCATCATACACTGGAAAGAGACACAGCATTGTTATTCCCTAGATGTGGAAACAAAGCGTGTGTGGGATTTTGTGGGAGACAACTACGTTCATAGACTTATTCAGTCCAAAACCGATGGGAAGTTGGTTGAGCTGAACACGCACTGTGTTCATGCAGAGAATGGATGTGCAAGTTGCAGCTGTGAAGATAACTCTATGAGCGAGGCGATACTTAATAGTAAAGTTGAAGCTATTGTCAACGAGTACAATGAATTGCTTGCTACTCAACTTGAGAACCAAAAATCTTATTTTGAGTCGTTGTTACAAGAGGTAAAAGAAGAAACTGAGAGACAAATCTCTAAAGCTGTTCAGAAGGCTGTCAGTCTTAAACAACAGAAGATTCAGGCCAAGATTGACAGATGTAACAAAGAGAAAAAATTTCTGGAGGAGCTTAATGAGAATCTTGTTAAAAATGAGGATGTTTGGAAAGCAAAGTTGCTTGAGATTGAGAAGAGGGGGAGAAAATTCTTAAAACTGTCGGAGGAGAGAGTAGCAGGCCTGGAAGAGCAGCTTAGAGATCTCATGGCTTGTCTAGATGATGGGAAGCCAGAAGAACAAAAGTTGCCTGTAACAAACGAAATCAAAGATGGGATTGTGTCTGCCTCATCAAAAGAATCCTCGTCAACGGCTAACTCTGAGCTTGGAAAAGATCCATAA 1458 0.4588 MSTSWRSSTPVSTPPISIPIPNPEEEEEEASSFSTSVFNFSSGNPRIEETRGLMHLFPDQDPPSSLPFGRKPLVCVVGVPNHMTYADFCQFCGSFLSHILEMRIVRMDGTEDQYSVLIRFDDQDSTDTFFNHYNGRRFSSLEVEVCRVLFTLDVQYTGSIEHAQPSNATSTEQPTCPVCLERLDQDTSGILTTICNHSFHCSCISKWADSSCPVCRYCQQQAEKSICSVCRTTENLWICVICGFVGCGRYKAGHAIIHWKETQHCYSLDVETKRVWDFVGDNYVHRLIQSKTDGKLVELNTHCVHAENGCASCSCEDNSMSEAILNSKVEAIVNEYNELLATQLENQKSYFESLLQEVKEETERQISKAVQKAVSLKQQKIQAKIDRCNKEKKFLEELNENLVKNEDVWKAKLLEIEKRGRKFLKLSEERVAGLEEQLRDLMACLDDGKPEEQKLPVTNEIKDGIVSASSKESSSTANSELGKDP 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90637g00026 485 SMART Zf_UBP_1 226 275 IPR001607 GO:0008270
Stsc90637g00026 485 CDD RING-H2_BRAP2 174 217 IPR047243 -
Stsc90637g00026 485 ProSiteProfiles Zinc finger RING-type profile. 176 216 IPR001841 -
Stsc90637g00026 485 PANTHER BRCA1-ASSOCIATED PROTEIN 25 477 - -
Stsc90637g00026 485 MobiDBLite consensus disorder prediction 1 32 - -
Stsc90637g00026 485 SUPERFAMILY RING/U-box 192 291 - -
Stsc90637g00026 485 Coils Coil 341 405 - -
Stsc90637g00026 485 ProSiteProfiles Zinc finger UBP-type profile. 210 303 IPR001607 GO:0008270
Stsc90637g00026 485 SMART ring_2 176 215 IPR001841 -
Stsc90637g00026 485 Pfam Ring finger domain 175 216 IPR001841 -
Stsc90637g00026 485 Pfam Zn-finger in ubiquitin-hydrolases and other protein 227 286 IPR001607 GO:0008270
Stsc90637g00026 485 Pfam BRCA1-associated protein 2 67 163 IPR011422 -
Stsc90637g00026 485 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 152 217 IPR013083 -
Stsc90637g00026 485 CDD RRM_BRAP2_like 74 155 - -
Stsc90637g00026 485 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 218 300 IPR013083 -
Stsc90637g00026 485 MobiDBLite consensus disorder prediction 449 485 - -
Stsc90637g00026 485 MobiDBLite consensus disorder prediction 463 485 - -
Stsc90637g00026 485 Coils Coil 424 444 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90637g00026 Stsc-Chr90637 93341 96543 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90637g00026 172 216 C3H Transcription Factor Family AT1G72220 48.936 2.63e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90637g00026 K10632 - gmx:100794688 771.926