Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90637g00025 ATGGAGCAGTGCTGGGTGAACTGGCCTCTTCACACGGAACAGAAACAGGAAATAGTAGATCATGTGCAGGATGATTATGGAGATTCCTTGTTATTATTGGATGAGTGGCAGCAGCAGAAGCCACCTGAAGATGATGAAGACGATGATGATGACGATGACAATTTCCTCAGAGAAATCCTGCAGATGGCACCGCCTGAGGGAAAAAGGGATGCTGCACTCTCAAGGACATTCATTCTCTCCTTCGATAACTCAACCATAATACCAGCAGCCATACCAGACCAACCTCCAAAGAAACGGCATCAAGCAAGGAAGGAGCATGAAGGAGCAGCAAAGAAGGGTCGAAACGACTCTCAGATTCTGGATCACATTATGTCTGAGAGAAAAAGAAGACAACAACTCACCCAGATGTTCATAGCACTCTCTGCCACTATTCCTGGCTTGAAGAAGACGGACAAGGCTTCTATACTTGGGGAAGCTATCAATTACGTGAAACAGCTTCAAGAACGCGTGAGGGAGCTGGAAAACCGAAACAAGGAGAGGGGCCCACCTGCAGAGCCACCAGTCATATTCCTGAAGAAGACTACTGATGATGATGAACAAGAACAAGTAGAAGAACAGGTGCTCCCTGATGTTGAAGGTAGAGTGCTGGAGAAGGAGAAGGAGGTGCTGATTGAGATCCATTGCGTGAAACAGAATGGAATCGAGTTGAAGATATTGGAAGAGCTTGAAAATGTTCATCATCTGAGTGTGACAGGAAGCAGCGTTTTGCCCTTTGGGAATTCCACTCTTGGGATCACCATCGTTGCCAAGATGCCTCATGATGGCGCCTACACAATCACACTGCCTCATCTCCTCACAAATTTACGCCAATTGCTACTTTCATCATCATTCATCAACACTACTCATGATCCGTACTAG 918 0.463 MEQCWVNWPLHTEQKQEIVDHVQDDYGDSLLLLDEWQQQKPPEDDEDDDDDDDNFLREILQMAPPEGKRDAALSRTFILSFDNSTIIPAAIPDQPPKKRHQARKEHEGAAKKGRNDSQILDHIMSERKRRQQLTQMFIALSATIPGLKKTDKASILGEAINYVKQLQERVRELENRNKERGPPAEPPVIFLKKTTDDDEQEQVEEQVLPDVEGRVLEKEKEVLIEIHCVKQNGIELKILEELENVHHLSVTGSSVLPFGNSTLGITIVAKMPHDGAYTITLPHLLTNLRQLLLSSSFINTTHDPY 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90637g00025 305 SMART finulus 123 172 IPR011598 GO:0046983
Stsc90637g00025 305 Pfam Helix-loop-helix DNA-binding domain 122 167 IPR011598 GO:0046983
Stsc90637g00025 305 PANTHER BHLH TRANSCRIPTION FACTOR 41 292 - -
Stsc90637g00025 305 MobiDBLite consensus disorder prediction 88 116 - -
Stsc90637g00025 305 Gene3D - 109 180 IPR036638 GO:0046983
Stsc90637g00025 305 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 120 185 IPR036638 GO:0046983
Stsc90637g00025 305 Coils Coil 156 176 - -
Stsc90637g00025 305 MobiDBLite consensus disorder prediction 96 116 - -
Stsc90637g00025 305 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 117 166 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90637g00025 Stsc-Chr90637 90266 91931 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90637g00025 103 298 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 45.320 2.46e-37 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc90637g00025 HLH 1.1e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90637g00025 - - adu:107459735 315.849