Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90637g00024 ATGAGCATGTTCATGTTGAGAGAGGGACAGCAGCAAGGCATAGGCATAGGCATGGAGACGCAAAGGCAAAGCATAACGGGGATCTTCTCCAACCAATCCCTTCCTCCTCCGCAAACAAGAAATGATCTGGAAGGAATCGCTGCAATTGTTGGAGAACAAGTCCTGTTCGGCACCAAAAATGACAACAACAAAATCATGCACCATAACAATAACAATAACACGCTCACCAAGAGGTACAGAGGTGTCAGGAAGAGGCCCTGGGGGAGGTGGTCCGCCGAGATACGCGACCGTATTGGCCGCTGCCGCCACTGGCTTGGCACCTTCGACACCGCGGAGGAGGCGGCGCGTGCATACGATGCGGCCGCTAGGCGCCTCAGAGGCTCCAAAGCTCGAACCAACTTCGAGATAGCGCCCGTGTTGCCGGTTTCGGTGTCGTCTTCGTCTTGTATTAGTGGGGGAATCAGGAAGAGGAAAGGGAGGCGCGGTGGCGATAGCAAGTGTTCGGTGGTTACGTCAGTGGCACAATTGTTCAGTTCTGGGGTGCCTCATCCTCATCCTCATCCATTAGGAAGCAGCGAGAGCGGTTTGGGGAGTGTTGAGCTCGACCTCAAGCTTGGTGTCACGACTGCGGAGCATTCCTCATGCTTCAGCCATCAAAGGACTCAGAATCCAAACAACTTTAACACCATCGGGTTCAGCATGATTCAAATAGCTTTGGCCTATGGCCTCGCCGATCAAAACATATCTTTGCATTCCTGA 759 0.531 MSMFMLREGQQQGIGIGMETQRQSITGIFSNQSLPPPQTRNDLEGIAAIVGEQVLFGTKNDNNKIMHHNNNNNTLTKRYRGVRKRPWGRWSAEIRDRIGRCRHWLGTFDTAEEAARAYDAAARRLRGSKARTNFEIAPVLPVSVSSSSCISGGIRKRKGRRGGDSKCSVVTSVAQLFSSGVPHPHPHPLGSSESGLGSVELDLKLGVTTAEHSSCFSHQRTQNPNNFNTIGFSMIQIALAYGLADQNISLHS 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90637g00024 252 ProSiteProfiles AP2/ERF domain profile. 78 135 IPR001471 GO:0003700|GO:0006355
Stsc90637g00024 252 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 64 164 - -
Stsc90637g00024 252 CDD AP2 77 137 IPR001471 GO:0003700|GO:0006355
Stsc90637g00024 252 SMART rav1_2 78 141 IPR001471 GO:0003700|GO:0006355
Stsc90637g00024 252 SUPERFAMILY DNA-binding domain 78 135 IPR016177 GO:0003677
Stsc90637g00024 252 PRINTS Ethylene responsive element binding protein signature 101 117 IPR001471 GO:0003700|GO:0006355
Stsc90637g00024 252 PRINTS Ethylene responsive element binding protein signature 79 90 IPR001471 GO:0003700|GO:0006355
Stsc90637g00024 252 Pfam AP2 domain 78 127 IPR001471 GO:0003700|GO:0006355
Stsc90637g00024 252 Gene3D AP2/ERF domain 77 137 IPR036955 GO:0003700|GO:0006355
Stsc90637g00024 252 FunFam Ethylene-responsive transcription factor 2 77 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90637g00024 Stsc-Chr90637 80583 81632 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90637g00024 25 147 AP2-EREBP Transcription Factor Family AT1G80580 55.970 2.16e-30 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Stsc90637g00024 AP2 2.9e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90637g00024 - - aip:107614619 199.519