Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90637g00021 ATGACCCGCCTTGTTCTGTTTCTTCATGCTGCTCGTGCAAATGCACAACCTCCAGGAGTTGAGGTTAGAATGGTGCACCACCAGCATTTGAATAAGCCGGCTCAAATGTCACTAATTGTTTGTTCTGCGCTTCTCCTTGGAATCTTCCTACTTGTATTCTATGTCTGGTTTCGTCGCCATAGAAGCTTAACAAGCTCCAGCACTAAAACCCAAGGAAACATGGAGGCTGCAAAGGGGGGGAGCTTAAGCTTAAACCATGTCAATGCTAAACTTAACTACTCAAGGATGGCAGATAACAAGAGTTCACTTGCTATTTTTGACTTTCACTTGTTAGAGGCTGCAACAAACAGCTTTAGCCAAAGTAGCATTATGGCAGAGAGTGGTTCCAGAATTGTTTACAGAGCTCGTCTTGATGATAACTTCCATGCAGCTGTGAAGAAAGCAGATAGTGATGCTGACAGAGAATTTGAGAATGAAGTGAGTTGGCTGAGCAAGATTCGGCATCAGAATATCATAAAACTCATGGGCTATTGCATTCATGGTGAATCAAGATTTCTTGTTTATGAATTGATGGAGAATGGATCATTGGAAACTCAATTGCATGGGCCTAATCGCGCATCGTCTTTAACTTGGTATCTCCGTTTAAGAATTGCAGTCGATGTTGCCAGAGCATTAGAATATCTTCACGAACACTCCAATCCCCCTGTGGTTCATAGGGATATAAAGTCTTCCAATGTTCTTCTGGATTCTAACTTTAATGCTAAGCTATCAGATTTTGGACTTGCTATCTCTTCTGGAATGCAACACAAGAACATGAAGATGTCGGGAACTTTGGGATATGTGGCTCCTGAGTACATTTCACATGGTAAACTAACTGATAAGAGCGATGTGTATGCTTTTGGGGTTGTCCTTTTAGAACTTGTGACTGGAAAAAAACCGATGGAGAACATGTCCTCGGAGCAATACCAATCCCTGGTTTCATGGGCCATGCCTCAGCTAACAGACAGATTGAAGCTTCCAAGCATTGTGGATCCTGTTATCAGAGACACAATGGATTTGAAGCATTTATATCAGGTTGCTGCAGTAGCTGTTCTGTGTGTGCAAGCAGAACCAAGTTATAGGCCGCTAATAACAGATGTGCTGCATTCCCTCATCCCTTTGGTGGTACAGATTACAGAACCAAGCTAA 1188 0.4259 MTRLVLFLHAARANAQPPGVEVRMVHHQHLNKPAQMSLIVCSALLLGIFLLVFYVWFRRHRSLTSSSTKTQGNMEAAKGGSLSLNHVNAKLNYSRMADNKSSLAIFDFHLLEAATNSFSQSSIMAESGSRIVYRARLDDNFHAAVKKADSDADREFENEVSWLSKIRHQNIIKLMGYCIHGESRFLVYELMENGSLETQLHGPNRASSLTWYLRLRIAVDVARALEYLHEHSNPPVVHRDIKSSNVLLDSNFNAKLSDFGLAISSGMQHKNMKMSGTLGYVAPEYISHGKLTDKSDVYAFGVVLLELVTGKKPMENMSSEQYQSLVSWAMPQLTDRLKLPSIVDPVIRDTMDLKHLYQVAAVAVLCVQAEPSYRPLITDVLHSLIPLVVQITEPS 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90637g00021 395 CDD STKc_IRAK 124 387 - -
Stsc90637g00021 395 ProSiteProfiles Protein kinase domain profile. 118 385 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90637g00021 395 Gene3D Phosphorylase Kinase; domain 1 80 190 - -
Stsc90637g00021 395 Gene3D Transferase(Phosphotransferase) domain 1 191 391 - -
Stsc90637g00021 395 Pfam Protein tyrosine and serine/threonine kinase 139 330 IPR001245 GO:0004672|GO:0006468
Stsc90637g00021 395 SMART serkin_6 118 385 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90637g00021 395 SUPERFAMILY Protein kinase-like (PK-like) 94 384 IPR011009 -
Stsc90637g00021 395 PANTHER OS01G0750732 PROTEIN 19 386 - -
Stsc90637g00021 395 FunFam probable receptor-like protein kinase At1g80640 191 389 - -
Stsc90637g00021 395 ProSitePatterns Serine/Threonine protein kinases active-site signature. 236 248 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90637g00021 Stsc-Chr90637 68856 71039 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90637g00021 10 330 Receptor kinase-like Gene Family AT1G80640 46.319 7.66e-97 291
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-X Stsc90637g00021 PK_Tyr_Ser-Thr 5.1e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90637g00021 - - gmx:100811491 610.912