Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90637g00020 ATGACCCGCCTTGTTCTGTTTCTTCATGCTGCTCGTGCAAATGCACAACCTCCAGGAGTTGAGGTTAGAATGGTGCACCACCAGCATTTGAATAAGCCGGCTCAAATGTCACTAATTGTTTGTTCTGCGCTTCTCCTTGGAATCTTCCTACTTGTATTCTATGTCTGGTTTCGTCGCCATAGAAGCTTAACAAGCTCCAGCACTAAAACCCAAGGAAACATGGAGGCTGCAAAGGGGGGGAGCTTAAGCTTAAACCATGTCAATGCTAAACTTAACTACTCAAGGATGGCAGATAACAAGAGTTCACTTGCTATTTTTGACTTTCACTTGTTAGAGGCTGCAACAAACAGCTTTAGCCAAAGTAGCATTATGGCAGAGAGTGGTTCCAGAATTGTTTACAGAGCTCGTCTTGATGATAACTTCCATGCAGCTGTGAAGAAAGCAGATAGTGATGCTGACAGAGAATTTGAGAATGAAGTGAGTTGGCTGAGCAAGATTCGGCATCAGAATATCATAAAACTCATGGGCTATTGCATTCATGGTGAATCAAGATTTCTTGTTTATGAATTGATGGAGAATGGATCATTGGAAACTCAATTGCATGGGCCTAATCGCGCATCGTCTTTAACTTGGTATCTCCGTTTAAGAATTGCAGTCGATGTTGCCAGAGCATTAGAATATCTTCACGAACACTCCAATCCCCCTGTGGTTCATAGGGATATAAAGTCTTCCAATGTTCTTCTGGATTCTAACTTTAATGCTAAGCTATCAGATTTTGGACTTGCTATCTCTTCTGGAATGCAACACAAGAACATGAAGATGTCGGGAACTTTGGGATATGTGGCTCCTGAGTACATTTCACATGGTAAACTAACTGATAAGAGCGATGTGTATGCTTTTGGGGTTGTCCTTTTAGAACTTGTGACTGGAAAAAAACCGATGGAGAACATGTCCTCGGAGCAATACCAATCCCTGGTTTCATGGGTATGTTTCCTTTCGAAAACGTCTTAG 1011 0.4204 MTRLVLFLHAARANAQPPGVEVRMVHHQHLNKPAQMSLIVCSALLLGIFLLVFYVWFRRHRSLTSSSTKTQGNMEAAKGGSLSLNHVNAKLNYSRMADNKSSLAIFDFHLLEAATNSFSQSSIMAESGSRIVYRARLDDNFHAAVKKADSDADREFENEVSWLSKIRHQNIIKLMGYCIHGESRFLVYELMENGSLETQLHGPNRASSLTWYLRLRIAVDVARALEYLHEHSNPPVVHRDIKSSNVLLDSNFNAKLSDFGLAISSGMQHKNMKMSGTLGYVAPEYISHGKLTDKSDVYAFGVVLLELVTGKKPMENMSSEQYQSLVSWVCFLSKTS 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90637g00020 336 SMART serkin_6 118 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90637g00020 336 SUPERFAMILY Protein kinase-like (PK-like) 94 328 IPR011009 -
Stsc90637g00020 336 ProSiteProfiles Protein kinase domain profile. 118 336 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90637g00020 336 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 24 331 - -
Stsc90637g00020 336 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 191 334 - -
Stsc90637g00020 336 Gene3D Phosphorylase Kinase; domain 1 80 190 - -
Stsc90637g00020 336 Pfam Protein tyrosine and serine/threonine kinase 138 324 IPR001245 GO:0004672|GO:0006468
Stsc90637g00020 336 Gene3D Transferase(Phosphotransferase) domain 1 191 336 - -
Stsc90637g00020 336 ProSitePatterns Serine/Threonine protein kinases active-site signature. 236 248 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90637g00020 Stsc-Chr90637 68706 71039 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90637g00020 10 328 Receptor kinase-like Gene Family AT1G80640 46.605 3.27e-98 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-X Stsc90637g00020 PK_Tyr_Ser-Thr 1.5e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90637g00020 - - gmx:100811491 507.294