Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90637g00012 ATGGTTGGCACCTCTGCCTCTGCCTCTGCCTCTGCCTCTACGCAGCCACAATTCATTACCAGCACTGGCAACCGGAGTATATCGAATACGAATACGCCCCTCATTGACAACTCAGATGTTGAGCAAGTTGTTGTGCCTGATAGGACAAGCTGGAAGAACTTATTTTCATACATGGGGCCTGGCTTTCTTGTTTCCATTGCATACATCGACCCGGGAAACTTTGAGACGGATCTTCAGTCGGGGGCTCAACATAAATATGAGCTCCTTTGGATCATATTGCTCGCATCCTCTGCTGCTCTATTAATTCAATCCATGGCAGCCAATCTCGGGGTGGTCACTGGAAAGCACCTGGCAGAGCATTGTAGAAATGAATATCCCTCCGCCACCAACTTTATTCTTTGGTTTATTGCTGAAATTGCCATAGTAGCCTGTGACATTCCTGAGGTAATTGGGACAGCCTTTGCATTGAACATGCTTTTCAGCATACCTGTTTGGATTGGTGTTCTTCTCACAGGACTCAGTACATTGATCCTCTTAGCTTTGCAGCAATATGGGGTTAGAAAACTTGAATTCTTGATTGCATTTCTAGTATTCACAATTGCTGCATGCTTTTTTGCCGAGCTTGGATATGCAAAGCCTGTTGCTAAACAAGTTCTCAAGGGTCTTTTTGTGCCACAACTAAAAGGAAGCGGTGCTACTGGTCTCGCGATTTCACTCCTAGGGGCTATGGTTATGCCTCACAATCTCTTCCTGCACTCAGCTCTGGTACTTTCTAGGAAAATACCACGATCAGTTCGGGGAATCAAGGAGGCTTGTAGATTTTACTTGATAGAAAGTGCCTTTGCTCTCATGGTGGCCTTCCTCATAAATGTTTCTGTTATCTCTGTGAGCGGTGCTGTTTGCAATTCTTCAAATTTGAATGCAGAAGATCAGATGAGCTGTCAGGATTTGGATCTGAACAAAGCCTCCTTTCTACTTAGAAATATGTTGGGAAAATGGAGTTCAAAACTGTTTGGAGTAGCTTTACTAGCATCAGGCCAAAGTTCTACTATAACAGGAACATATGCAGGGCAGTATGTCATGCAGGGATTTCTTGATTTGCGACTGGAGCCATGGATTCGGAATATGCTAACTCGTTGTTTAGCCATAGTTCCTAGTTTGATTGTTGCGGTCATTGGTGGCTCTGCTGGGGCTGGCAAGCTCATAATAATTGCATCAATGATCCTATCATTTGAGCTTCCTTTTGCTTTAATTCCACTCCTCAAGTTCACAAGCAGCAAAACCAAGATGGGAGAGCATGTAAACTCTACCATGATTTCAGCTGTTACTTGGATAATTGGTTCCCTAATTATGGTCATTAATATATATTATCTATTGACTGGCTTTGTGAAGCTGCTTCTCCACAGTCATATTCAAGTTGTGGGTAAGGTATTTTTGGGCATACTAGGGTTTTCAGGCATGGCTGTATATTTGGTTGGCATAGCATATCTGGTGCTTCGCAAAAATAACAAGGCTACGAACCTTTTGGCGCTAACAGCACCGGAAAGCCGGAAAACAGCAAATGAACAAGGCAATGCGTCCATCGATTCTCTCCCAAGAGAAGACATAGTAAGCATGCAGTTGCCTCAAAGAACTAGTGCTGTTGATCTTGACTGA 1656 0.4366 MVGTSASASASASTQPQFITSTGNRSISNTNTPLIDNSDVEQVVVPDRTSWKNLFSYMGPGFLVSIAYIDPGNFETDLQSGAQHKYELLWIILLASSAALLIQSMAANLGVVTGKHLAEHCRNEYPSATNFILWFIAEIAIVACDIPEVIGTAFALNMLFSIPVWIGVLLTGLSTLILLALQQYGVRKLEFLIAFLVFTIAACFFAELGYAKPVAKQVLKGLFVPQLKGSGATGLAISLLGAMVMPHNLFLHSALVLSRKIPRSVRGIKEACRFYLIESAFALMVAFLINVSVISVSGAVCNSSNLNAEDQMSCQDLDLNKASFLLRNMLGKWSSKLFGVALLASGQSSTITGTYAGQYVMQGFLDLRLEPWIRNMLTRCLAIVPSLIVAVIGGSAGAGKLIIIASMILSFELPFALIPLLKFTSSKTKMGEHVNSTMISAVTWIIGSLIMVINIYYLLTGFVKLLLHSHIQVVGKVFLGILGFSGMAVYLVGIAYLVLRKNNKATNLLALTAPESRKTANEQGNASIDSLPREDIVSMQLPQRTSAVDLD 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90637g00012 551 PRINTS Natural resistance-associated macrophage protein signature 406 425 IPR001046 GO:0016020|GO:0030001|GO:0046873
Stsc90637g00012 551 PRINTS Natural resistance-associated macrophage protein signature 133 159 IPR001046 GO:0016020|GO:0030001|GO:0046873
Stsc90637g00012 551 PRINTS Natural resistance-associated macrophage protein signature 236 259 IPR001046 GO:0016020|GO:0030001|GO:0046873
Stsc90637g00012 551 PRINTS Natural resistance-associated macrophage protein signature 346 365 IPR001046 GO:0016020|GO:0030001|GO:0046873
Stsc90637g00012 551 PRINTS Natural resistance-associated macrophage protein signature 374 391 IPR001046 GO:0016020|GO:0030001|GO:0046873
Stsc90637g00012 551 PRINTS Natural resistance-associated macrophage protein signature 161 180 IPR001046 GO:0016020|GO:0030001|GO:0046873
Stsc90637g00012 551 PRINTS Natural resistance-associated macrophage protein signature 186 207 IPR001046 GO:0016020|GO:0030001|GO:0046873
Stsc90637g00012 551 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 28 507 IPR001046 GO:0016020|GO:0030001|GO:0046873
Stsc90637g00012 551 Pfam Natural resistance-associated macrophage protein 74 436 IPR001046 GO:0016020|GO:0030001|GO:0046873
Stsc90637g00012 551 Hamap Divalent metal cation transporter MntH [mntH]. 35 462 IPR001046 GO:0016020|GO:0030001|GO:0046873
Stsc90637g00012 551 NCBIfam metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 53 430 IPR001046 GO:0016020|GO:0030001|GO:0046873
Stsc90637g00012 551 NCBIfam Nramp family divalent metal transporter 59 427 - -
Stsc90637g00012 551 MobiDBLite consensus disorder prediction 14 33 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90637g00012 Stsc-Chr90637 39277 42740 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90637g00012 21 551 Inorganic Solute Cotransporters AT1G15960 78.090 0.0 847
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90637g00012 K21398 - gmx:100797298 894.419