Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90637g00011 ATGGTTGGCACCTCTGCCTCTGCCTCTGCCTCTGCCTCTACGCAGCCACAATTCATTACCAGCACTGGCAACCGGAGTATATCGAATACGAATACGCCCCTCATTGACAACTCAGATGTTGAGCAAGTTGTTGTGCCTGATAGGACAAGCTGGAAGAACTTATTTTCATACATGGGGCCTGGCTTTCTTGTTTCCATTGCATACATCGACCCGGGAAACTTTGAGACGGATCTTCAGTCGGGGGCTCAACATAAATATGAGCTCCTTTGGATCATATTGCTCGCATCCTCTGCTGCTCTATTAATTCAATCCATGGCAGCCAATCTCGGGGTGGTCACTGGAAAGCACCTGGCAGAGCATTGTAGAAATGAATATCCCTCCGCCACCAACTTTATTCTTTGGTTTATTGCTGAAATTGCCATAGTAGCCTGTGACATTCCTGAGGTAATTGGGACAGCCTTTGCATTGAACATGCTTTTCAGCATACCTGTTTGGATTGGTGTTCTTCTCACAGGACTCAGTACATTGATCCTCTTAGCTTTGCAGCAATATGGGGTTAGAAAACTTGAATTCTTGATTGCATTTCTAGTATTCACAATTGCTGCATGCTTTTTTGCCGAGCTTGGATATGCAAAGCCTGTTGCTAAACAAGTTCTCAAGGGTCTTTTTGTGCCACAACTAAAAGGAAGCGGTGCTACTGGTCTCGCGATTTCACTCCTAGGGGCTATGGTTATGCCTCACAATCTCTTCCTGCACTCAGCTCTGGTACTTTCTAGGAAAATACCACGATCAGTTCGGGGAATCAAGGAGGCTTGTAGATTTTACTTGATAGAAAGTGCCTTTGCTCTCATGGTGGCCTTCCTCATAAATGTTTCTGTTATCTCTGTGAGCGGTGCTGTTTGCAATTCTTCAAATTTGAATGCAGAAGATCAGATGAGCTGTCAGGATTTGGATCTGAACAAAGCCTCCTTTCTACTTAGAAATATGTTGGGAAAATGGAGTTCAAAACTGTTTGGAGTAGCTTTACTAGCATCAGGCCAAAGTTCTACTATAACAGGAACATATGCAGGGCAGTATGTCATGCAGGGATTTCTTGATTTGCGACTGGAGCCATGGATTCGGAATATGCTAACTCGTTGTTTAGCCATAGTTCCTAGTTTGATTGTTGCGGTCATTGGTGGCTCTGCTGGGGCTGGCAAGCTCATAATAATTGCATCACTGGTGCTGACGTCCCTCTTTGTCTACATACTGATCAGATGA 1260 0.446 MVGTSASASASASTQPQFITSTGNRSISNTNTPLIDNSDVEQVVVPDRTSWKNLFSYMGPGFLVSIAYIDPGNFETDLQSGAQHKYELLWIILLASSAALLIQSMAANLGVVTGKHLAEHCRNEYPSATNFILWFIAEIAIVACDIPEVIGTAFALNMLFSIPVWIGVLLTGLSTLILLALQQYGVRKLEFLIAFLVFTIAACFFAELGYAKPVAKQVLKGLFVPQLKGSGATGLAISLLGAMVMPHNLFLHSALVLSRKIPRSVRGIKEACRFYLIESAFALMVAFLINVSVISVSGAVCNSSNLNAEDQMSCQDLDLNKASFLLRNMLGKWSSKLFGVALLASGQSSTITGTYAGQYVMQGFLDLRLEPWIRNMLTRCLAIVPSLIVAVIGGSAGAGKLIIIASLVLTSLFVYILIR 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90637g00011 419 PRINTS Natural resistance-associated macrophage protein signature 133 159 IPR001046 GO:0016020|GO:0030001|GO:0046873
Stsc90637g00011 419 PRINTS Natural resistance-associated macrophage protein signature 374 391 IPR001046 GO:0016020|GO:0030001|GO:0046873
Stsc90637g00011 419 PRINTS Natural resistance-associated macrophage protein signature 161 180 IPR001046 GO:0016020|GO:0030001|GO:0046873
Stsc90637g00011 419 PRINTS Natural resistance-associated macrophage protein signature 236 259 IPR001046 GO:0016020|GO:0030001|GO:0046873
Stsc90637g00011 419 PRINTS Natural resistance-associated macrophage protein signature 186 207 IPR001046 GO:0016020|GO:0030001|GO:0046873
Stsc90637g00011 419 PRINTS Natural resistance-associated macrophage protein signature 346 365 IPR001046 GO:0016020|GO:0030001|GO:0046873
Stsc90637g00011 419 NCBIfam metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 53 413 IPR001046 GO:0016020|GO:0030001|GO:0046873
Stsc90637g00011 419 NCBIfam Nramp family divalent metal transporter 59 416 - -
Stsc90637g00011 419 MobiDBLite consensus disorder prediction 14 33 - -
Stsc90637g00011 419 Pfam Natural resistance-associated macrophage protein 74 415 IPR001046 GO:0016020|GO:0030001|GO:0046873
Stsc90637g00011 419 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 28 412 IPR001046 GO:0016020|GO:0030001|GO:0046873
Stsc90637g00011 419 Hamap Divalent metal cation transporter MntH [mntH]. 35 417 IPR001046 GO:0016020|GO:0030001|GO:0046873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90637g00011 Stsc-Chr90637 39277 42740 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90637g00011 21 410 Inorganic Solute Cotransporters AT1G15960 84.359 0.0 680
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90637g00011 K21398 - gmx:100808501 672.159