Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90637g00007 ATGAGGAAACTGAGATTTAATCTAAAGGGAGGAGGGGCGGTTCCTGCTAGTAGCGGTGGGAGTGGGGGAATAAGGAGAAACAATAATGCATCAAAATCATTTAGGGTAGGAATGAGAAGGGGATCAAATGGGCTAAAAGTACTCGGAAGATCCCTGAAAAGTGGAGTGACGTGGGCATCAGTGTTCCCAGAAGATCTAAAAGTGTCTGAGAGAAAAATATTTGACCCTCAAGACAAGACTCTTCTGCAGTGGAATAAATTCTTTCAAGTATTTGGTATCATATCTGTATCTTTTGATCCTCTTTTCTTTTATCTTCCATATTTCAATCACAAATCATACTGCCTCGCCATAGACAACAGCCTGGCACGCTATGCAGTTACACTCAGAACAATCTTCGATGCTATTTACATCCTTCGCATAAGTTTCCAATTTCGCACTGCTTTCATTGCCCCTTCTTCTCGTGTATTTGGACGAGGTGAACTCGTCATAGATCCTGCAGAGATTGCTAAGAGATATTTGCGACGTTACTTCATTGTTGACTTCCTCTCTGTCTTGCCTTTGCCACAGATTGTTGTGTGGAGATATCTTCATGATCCAGCTCGCACAAAGATAACGGGCTCTGTATGGTACTTATTAGCCGTAGAACGTAATGACACATGCTGGAGGGATGCTTGCATGGAGCAAGAGCTGTGTTTTACGCATTTCTTGTACTGTGGGGGTTCAAATAAGCGTGCTACTGGCTATGAAGAATGGAGGAAAATTAGCCCAAAGATTCTTAAGGCTAAATGCTCCGCTGATGACGATGAAGCCCCTTTTGACTATGGAATTTTCAATCAAGCCATAACATCTAATATTGTTGCATCAATTAATTTCTTTCCTAAACTTTGTTACTGTTTATGGTGGGGTGTCCAAAACATAAGCACACTTGGTCAAGGGCTTGAAGCTAGCACCTACGTTGGTGAAATTCTGTTTTGCATAGTGATAGCTGTTTTGGGGCTTGTCCTTTTTGCTGTTTTGATTGGAAAGATGCAGAACTTTCTTCAATCCATGTCTGTCCGTCTAGAGGAAATGAGGATCAGAAGACGTGACTCGGAGCAATGGATGCACCACCGCTTGCTTCCTGCTGAGCTAAGGGAAAAAGTTAGACGCTATGATAAATGTAAATGGTTTAACACACGTGGGGTAGATGAAGAGAGCTTGGTTCAGAAACTTCCAAAAGATCTGAGGAGAGACATCAAGCGATACCTTTGTTTGAATTTGGTCAGAAGGGTTCCTCTGTTTGCCAACATGGATGAGCGGTTGCTGGATGCAATATGCGAGAGGCTAAAGCCATGTCTGCATACCAAGGGGACGTGCATAATAAGAGAAGGGGATCCGGTAAATGAGATGTTGTTCATCGTACGTGGCCAACTTGAGAGCGTGACCACTGATGGAGGAAGAAGCGGATTTTTCAACAGAGGTTTTCTCAAAGAAGGTGACTTCTGTGGTGAAGAGCTCTTAACATGGGCACTGGACCCGAAATCATCCTCCAACTTACCCTCTTCTACAAGGACTGTCAAGGCCATGGAGGAAATGGAGGCATTTGCTCTTGAGGCTGAGGAGCTCAAGTTTGTTGCTTCTCAGTTCAGACGCTTCCACAGCAGGCAGGTTCAGCACACCTTCCGTTTCTACTCTCAGCAGTGGAGGACATGGGCTGCTATCTTCATTCAGGCTGCTTGGAGGCGCTACCAGAGGAGGAAAATTGCAGCCATGCTCCACATCAACAAGCCTGATGATGAATCCGATGAAGATGATGATGATGATGAAACAAAGGCCTTGGTTCCATCTTCTTCAACATCTTCATCGTCTATTACTACTGCTAATGCTAATAGCAATAGTGCTTCTTCTTCTTCTACTACTAGCAGGTTTGGATTAGATTCGGCTATGTATGCTTCCCGGTTTGCTACTAATCTTCGTGGGCAGAGGCTTCGTTCATCCAGTTCGGAGAGCATCGGGCTTCCCCCTCAAAAGCCTCGAGAACCGGACTTCAGCCATCTTGATGAGCCACCCTAA 2052 0.4459 MRKLRFNLKGGGAVPASSGGSGGIRRNNNASKSFRVGMRRGSNGLKVLGRSLKSGVTWASVFPEDLKVSERKIFDPQDKTLLQWNKFFQVFGIISVSFDPLFFYLPYFNHKSYCLAIDNSLARYAVTLRTIFDAIYILRISFQFRTAFIAPSSRVFGRGELVIDPAEIAKRYLRRYFIVDFLSVLPLPQIVVWRYLHDPARTKITGSVWYLLAVERNDTCWRDACMEQELCFTHFLYCGGSNKRATGYEEWRKISPKILKAKCSADDDEAPFDYGIFNQAITSNIVASINFFPKLCYCLWWGVQNISTLGQGLEASTYVGEILFCIVIAVLGLVLFAVLIGKMQNFLQSMSVRLEEMRIRRRDSEQWMHHRLLPAELREKVRRYDKCKWFNTRGVDEESLVQKLPKDLRRDIKRYLCLNLVRRVPLFANMDERLLDAICERLKPCLHTKGTCIIREGDPVNEMLFIVRGQLESVTTDGGRSGFFNRGFLKEGDFCGEELLTWALDPKSSSNLPSSTRTVKAMEEMEAFALEAEELKFVASQFRRFHSRQVQHTFRFYSQQWRTWAAIFIQAAWRRYQRRKIAAMLHINKPDDESDEDDDDDETKALVPSSSTSSSSITTANANSNSASSSSTTSRFGLDSAMYASRFATNLRGQRLRSSSSESIGLPPQKPREPDFSHLDEPP 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90637g00007 683 Pfam Cyclic nucleotide-binding domain 449 536 IPR000595 -
Stsc90637g00007 683 MobiDBLite consensus disorder prediction 652 683 - -
Stsc90637g00007 683 SMART cnmp_10 426 557 IPR000595 -
Stsc90637g00007 683 Pfam Ion transport protein 84 192 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Stsc90637g00007 683 Pfam Ion transport protein 205 353 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Stsc90637g00007 683 MobiDBLite consensus disorder prediction 652 666 - -
Stsc90637g00007 683 Gene3D Helix hairpin bin 346 417 - -
Stsc90637g00007 683 MobiDBLite consensus disorder prediction 1 29 - -
Stsc90637g00007 683 FunFam Cyclic nucleotide-gated ion channel 1 353 417 - -
Stsc90637g00007 683 MobiDBLite consensus disorder prediction 606 634 - -
Stsc90637g00007 683 MobiDBLite consensus disorder prediction 589 634 - -
Stsc90637g00007 683 ProSiteProfiles cAMP/cGMP binding motif profile. 426 510 IPR000595 -
Stsc90637g00007 683 CDD CAP_ED 426 557 IPR000595 -
Stsc90637g00007 683 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 203 676 - -
Stsc90637g00007 683 Gene3D Jelly Rolls 424 544 IPR014710 -
Stsc90637g00007 683 FunFam Cyclic nucleotide-gated ion channel 1 424 542 - -
Stsc90637g00007 683 SUPERFAMILY Voltage-gated potassium channels 76 348 - -
Stsc90637g00007 683 SUPERFAMILY cAMP-binding domain-like 356 547 IPR018490 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90637g00007 Stsc-Chr90637 28431 31117 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90637g00007 6 676 Ion Channels AT1G15990 57.666 0.0 801
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90637g00007 K05391 - gmx:100810453 874.004