Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90637g00001 ATGAAGAAAGGAGGTTGCCAGAAATCTTCAATTTCAGGGCAGCCTTATAGTTCGCTTTATTTCAATCCGCTGAATGAGAATGGGGATGGGGATCTTGATCTTGAGGTCCGGAAGAAGCAAAGCCAAAGCCAAAGCCAAAGCCGCACCCGCACCAGAAGTTGCAGCGACTATGGCCTTGGCAGCTTAGCCTCAGAGTTTGAGGACCCCGGCAACAAGGAAAACAAGGCCGCCATCATCAATGGCTCTTCTCTGCCGTCACCTAAGATTAAGAAGAAGCACTTCCCATCAAAGTCCACAGACACGATCTTGAAGCCGACATCGCTCCAGTTTTGCATGCAGATGAACGAGCCCGAGAGGGCTTTTACTTCCTTCAATATCTGGGACTGGGACTACTCTGACTCGGACGCTGCTCCTGCTTCTTCCTGGTCCACTTTACCTAACCGCACTTTGATCTGCAGACCCTTGCCCATTGATATTGGAACATGTACATGCCTTATTCTGAAGGAGCCCACTCCACAAGGCCACGGAACTCTCTATTCTCTTTATACCTATGAAGGTCAGGGACGCCAGAATAGGAAATTAGCAGTGGCCCATCACAAGCGCCGGAACGGCAGATCTCAATTCACAGTAGCTCAGAATGTTAAAGGACTCTTATGCAATTCCGATGATACCTTCCTTGGGACCATCACAGCTAACCTCTTGGGTTCAAAATACCATATCTGGGACCAGGGATATCGTCCTAATTCCCGCAACACACAACCCCAATTACCTCTTGCTGTAGTGAGGTATATACCCACAGTAGCAACATGTACCGGAAGTCACCGAAGCATGAGGGCATATATACCCAAGCATCAATCTATGTCACTCAAGAATATCACTCAGTTACAACATATTAAAGGGTTGCCATTGGATTGGGAGGAGGAATTGCAGAGAGTGCATCAACTGTTCTCAAAGGTTCCACTTTACAACAAGATTTCAAAGCAATTTGAGCTTGACTTTAGAGATAAAGGAAGGACAGAACTTACAATCCAAAGATCGGTGAAAAATTTCCAGCTCACTTTAGAGGAGAATGGAAAGCAGACGATCCTGCAGCTAGGAAGGTTGGGAAAATCAAAATTCGTTATGGACTACAGATATCCACTGACAGGGTACCAAGCTTTTTGCATATGTCTGGCTTCCATTGATGCAAAACTTTGCTGCACAGTGTAG 1209 0.4632 MKKGGCQKSSISGQPYSSLYFNPLNENGDGDLDLEVRKKQSQSQSQSRTRTRSCSDYGLGSLASEFEDPGNKENKAAIINGSSLPSPKIKKKHFPSKSTDTILKPTSLQFCMQMNEPERAFTSFNIWDWDYSDSDAAPASSWSTLPNRTLICRPLPIDIGTCTCLILKEPTPQGHGTLYSLYTYEGQGRQNRKLAVAHHKRRNGRSQFTVAQNVKGLLCNSDDTFLGTITANLLGSKYHIWDQGYRPNSRNTQPQLPLAVVRYIPTVATCTGSHRSMRAYIPKHQSMSLKNITQLQHIKGLPLDWEEELQRVHQLFSKVPLYNKISKQFELDFRDKGRTELTIQRSVKNFQLTLEENGKQTILQLGRLGKSKFVMDYRYPLTGYQAFCICLASIDAKLCCTV 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90637g00001 402 PRINTS Tubby superfamily signature 358 377 IPR000007 -
Stsc90637g00001 402 PRINTS Tubby superfamily signature 225 249 IPR000007 -
Stsc90637g00001 402 PRINTS Tubby superfamily signature 338 354 IPR000007 -
Stsc90637g00001 402 PRINTS Tubby superfamily signature 379 401 IPR000007 -
Stsc90637g00001 402 Gene3D Tubby Protein; Chain A 147 395 IPR025659 -
Stsc90637g00001 402 Pfam Tub family 153 395 IPR000007 -
Stsc90637g00001 402 SUPERFAMILY Tubby C-terminal domain-like 139 401 IPR025659 -
Stsc90637g00001 402 MobiDBLite consensus disorder prediction 7 24 - -
Stsc90637g00001 402 PANTHER TUBBY-RELATED 118 399 - -
Stsc90637g00001 402 MobiDBLite consensus disorder prediction 39 56 - -
Stsc90637g00001 402 MobiDBLite consensus disorder prediction 1 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90637g00001 Stsc-Chr90637 7439 9705 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90637g00001 93 295 TUB Transcription Factor Family AT1G16070 53.636 6.05e-77 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Stsc90637g00001 Tub 8.3e-42 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90637g00001 K19600 - cave:132188154 469.544