LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc90636g00033	ATGGGGGGCATGTGTTGCAAGCCCTCTGCCATTGAGGACAGTAAGGAGAGTCCGAGGGAGCGTTTATCTGCCAAGACTGTGTCGGATTTGCGTGTTTCTAGGGGAGCTTCATCGAGGAGGGAGGAATCATATCGAGTGAAGGATAGGTACGATAGCAATGATCCAAGGGTTGGATTGATTGATAAGCAAGGCAATGGAGCCGTTCGGGTGCAAGCCGATAATTATGAGAGGAAGAGGGATAAAATGGAATATGTTGTAGCTCCACATCCGGCAATCGGTACTGTTCCCAAGGCCATGGAAGGGGAGCAGGTTGCAGCTGGATGGCCCTCATGGCTGGCTGCAGTGGCTGGAGAGGCTATCAAAGGATGGTTGCCCCGGCGTGCAGATTCTTTTGAGAAGTTGGATAAAATTGGCCAGGGAACTTATAGTAATGTTTATAGAGCTCGTGATCTTGAACAAAGAAAGATTGTTGCTTTGAAAAAAGTGAGGTTTGATAATCTTGAGCCTGAGAGTGTTCGCTTCATGGCAAGGGAAATTCACATTCTGCGTAGACTTGATCATCCAAATGTCATAAAATTGGAAGGCTTGGTTACATCTAGGATGTCTTGCAGCTTATACCTGGTTTTCGAGTACATGGAACATGACTTGGCCGGGCTCGCATCCCATCCAGGACTGAAGTTCACAGAAGCACAGCAACTTCTACGTGGACTTGATCACTGCCACAACTGTGGAGTGCTGCACCAACTTTTGCTTGGAGCCACTTACTATGGCACTGCTGTAGATTTATGGAGTACCGGTTGCATACTTGCCGAATTATATGCTGGCAAGCCAATAATGCCTGGAAGAACTGAGGTGGAGCAATTACATAAAATTTTTAAACTGTGCGGTTCACCATCTGAGGATTATTGGAGAAAGTCAAAGTTACCTCATGCAACAATATTCAAGCCTCAACAGCCCTATAGGCGCTGTGTTTCTGAAACATTCAAGGACTTTCCTGCACCTGCAATACAACTGATAGAAACCCTTTTATCCATAGATCCTGCCGATCGTGGAACTTCAGCATCTGCTTTAAGGAGTGAGTTCTTCTCAACAAAACCTCTACCTTGCGATCCTTCAATCTTACCAAAGTATCCTCCTAGCAAAGAGTTTGATGCCAAAGTAAGGGACGAAGAGGCTAGAAGGCAAGGAGCAGCAGGAAACAAGGGTCAGAAACATGACCTTGAGAGAAGAGGTGTAAGAGAATCACGAGCCGTACCTGCACCAGATGCCAATGCTGAACTTGTCTCTTCAATGCAGAAGAGACAAAGTTATGCAAATTCTCAAAGCAGGAGTGAGAAGTTTAATCCTCACCCGGAAGAAGTTGCTTCAGGATTTCCCATTGATCCTCCTAGGCCATCACAAGCTGCAGAAGTAAGTGCAGATCCCCAGGTTCATCAGCACAAAAGAGCCTCCCATTCAGGTCCGCTGACTCACCGCGCTGCGTGGGCTAAGGCCGGAAAGAACCAGGATGATGCTCCGAAGATTTCAATGGGGGGCGGCGGTGACTTATCAACAATATCTGGTTTGGTTGCGGCCAGAAGAAGTATGTTGTCTGATGATCGGAGAGAAAGGTCCGGATCATCGCACGTGGAAGCTCCAAAACTAATAACCAGGTTCCCAGGATCCTTCAAAGAGGCCTCTGAATCCTTGATGCAACAGGATCAGAAGCATCATGCACATGCTCCCCAAAAGGAAGAAGGGAGAGTCAACAGCAAAGACCCAGTTCTTGTTGGTTATGGCTCCAAGGGTGCTAAAATCCATTATTCCGGTCCATTGCTAGTTCCATCAAGCAACATGGACCAGATGTTGAAGGACCACGACCGCCAAATTCAAGAGGCGGTTCGACGAGCTCGCCTAGACAAGGCGAAGATGAGGAAACTTCAAGCTGAAGGCAACCAGATAACCAATTCGTTATTCGTTTCTGGGCGTTGA	1971	0.4734	MGGMCCKPSAIEDSKESPRERLSAKTVSDLRVSRGASSRREESYRVKDRYDSNDPRVGLIDKQGNGAVRVQADNYERKRDKMEYVVAPHPAIGTVPKAMEGEQVAAGWPSWLAAVAGEAIKGWLPRRADSFEKLDKIGQGTYSNVYRARDLEQRKIVALKKVRFDNLEPESVRFMAREIHILRRLDHPNVIKLEGLVTSRMSCSLYLVFEYMEHDLAGLASHPGLKFTEAQQLLRGLDHCHNCGVLHQLLLGATYYGTAVDLWSTGCILAELYAGKPIMPGRTEVEQLHKIFKLCGSPSEDYWRKSKLPHATIFKPQQPYRRCVSETFKDFPAPAIQLIETLLSIDPADRGTSASALRSEFFSTKPLPCDPSILPKYPPSKEFDAKVRDEEARRQGAAGNKGQKHDLERRGVRESRAVPAPDANAELVSSMQKRQSYANSQSRSEKFNPHPEEVASGFPIDPPRPSQAAEVSADPQVHQHKRASHSGPLTHRAAWAKAGKNQDDAPKISMGGGGDLSTISGLVAARRSMLSDDRRERSGSSHVEAPKLITRFPGSFKEASESLMQQDQKHHAHAPQKEEGRVNSKDPVLVGYGSKGAKIHYSGPLLVPSSNMDQMLKDHDRQIQEAVRRARLDKAKMRKLQAEGNQITNSLFVSGR	656

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc90636g00033	656	Gene3D	Phosphorylase Kinase; domain 1	118	213	-	-
	Stsc90636g00033	656	MobiDBLite	consensus disorder prediction	381	416	-	-
	Stsc90636g00033	656	FunFam	probable serine/threonine-protein kinase At1g54610	118	213	-	-
	Stsc90636g00033	656	MobiDBLite	consensus disorder prediction	34	51	-	-
	Stsc90636g00033	656	MobiDBLite	consensus disorder prediction	428	445	-	-
	Stsc90636g00033	656	Pfam	Protein kinase domain	251	362	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc90636g00033	656	Pfam	Protein kinase domain	131	248	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc90636g00033	656	MobiDBLite	consensus disorder prediction	559	585	-	-
	Stsc90636g00033	656	PANTHER	CELL DIVISION PROTEIN KINASE	129	248	-	-
	Stsc90636g00033	656	Gene3D	Transferase(Phosphotransferase) domain 1	248	401	-	-
	Stsc90636g00033	656	SUPERFAMILY	Protein kinase-like (PK-like)	125	370	IPR011009	-
	Stsc90636g00033	656	MobiDBLite	consensus disorder prediction	373	489	-	-
	Stsc90636g00033	656	FunFam	-	251	402	-	-
	Stsc90636g00033	656	ProSiteProfiles	Protein kinase domain profile.	131	362	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc90636g00033	656	MobiDBLite	consensus disorder prediction	563	584	-	-
	Stsc90636g00033	656	MobiDBLite	consensus disorder prediction	1	51	-	-
	Stsc90636g00033	656	MobiDBLite	consensus disorder prediction	12	27	-	-
	Stsc90636g00033	656	Coils	Coil	623	643	-	-
	Stsc90636g00033	656	ProSitePatterns	Protein kinases ATP-binding region signature.	137	160	IPR017441	GO:0005524

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc90636g00033	Stsc-Chr90636	234967	240478	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc90636g00033	123	419	Core Cell Cycle Gene Families	AT5G10270	40.984	3.36e-77	253

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_CDK-CRK7-CDK9	Stsc90636g00033		Pkinase	7.3e-22	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc90636g00033	-		-	gmx:100792173	1173.3