Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90635g00035 ATGGCCTCTTCATCACTGGTCCCTCTGTATGTAGCAGTGGCTGTTGTAATACTTGTAGCCATAGGTATTATCAGTATCATTCGTAGATTTTTTTATTGCCTCAAATGCCTGAGCCGGATGATAAGGGAAAGTAGGTCAGACAAGACTCTAGTCAACACACTGAGGAGCCTCCCGGGAACTCCCAAAGAGTACAGCTTTGAGGATCTCAAGAAGGCAACCAACAACTTCAACGATGTCAAGAACAAGCTTGGACAAGGTGGTTTCGGTGCTGTTTACAAAGGAACACTCCCTAAGGACAACACTCAGGTTGCTGTCAAGAAGTTCTTGAGGGACAAGATCTATAGCACTCATGATTTCTTGGCTGAGCTCACAATCATCAATTCTCTTCGCCACAAGAACCTTGTCCGCTTACTTGGATGGTGCCACAAGAATGGGATACTACTGTTAGTATATGAATACATGCCTAATGGAAGCTTAGATAATCACATTTTCTTCAAGGAAGGGATCAAGAAAACCCCACTAAGTTGGCATCTAAGATACAAGATCATATCAGGCTTGGTTGCTGCTTTGAACTACCTACACAACGAGTGCGATCAGAAAGTGATCCACAGAGATCTCAAGGCGAGTAACATCATGCTGGACTCTGACTTCAATGCACGCTTAGGCGACTTTGGTTTGGCTCGTGCAATTGAGAATGAGAAGACATCATATGCAGATTTGCATGGTGTTCCTGGAACCATGGGCTACATTGCCCCAGAGTGCTTATACATCGGAAAGGCCACATGCGAATCCGATGTCTATGGATTCGGCGCGGTGTTGCTTGAGGTGGTGTGTGGACAGAGGCCATGGACTAAGAATGGGGACTATTTGTTGCTTGTGGATTGGGTTTGGCACCTGTACCGCGAGGGACGGATACTAGTGGCAGTGGATCCAAGGCTAGAGAATGAGTTTGAAGCTGAAGAAGCAGAGAGGGTGCTGAAATTGGGATTAGCATGCTCTCACCCCATTGCAAGTGAGAGGCCAAAGATGCAAACAATTGTACAGATCATATCAGGGTCAGTTCCTGTGCCTCATGTTCCACCCTTCAAGCCATCTTTTGTATGGCCTGCTATGGATCAAGGCACTTCCTCGGGTGATCCTTCTTCGAGCGAGCCTACAGCTGCAACTATAGAGTGTTCGCCCATCAACACAACCTTCTTTGCTCGTTAA 1209 0.4648 MASSSLVPLYVAVAVVILVAIGIISIIRRFFYCLKCLSRMIRESRSDKTLVNTLRSLPGTPKEYSFEDLKKATNNFNDVKNKLGQGGFGAVYKGTLPKDNTQVAVKKFLRDKIYSTHDFLAELTIINSLRHKNLVRLLGWCHKNGILLLVYEYMPNGSLDNHIFFKEGIKKTPLSWHLRYKIISGLVAALNYLHNECDQKVIHRDLKASNIMLDSDFNARLGDFGLARAIENEKTSYADLHGVPGTMGYIAPECLYIGKATCESDVYGFGAVLLEVVCGQRPWTKNGDYLLLVDWVWHLYREGRILVAVDPRLENEFEAEEAERVLKLGLACSHPIASERPKMQTIVQIISGSVPVPHVPPFKPSFVWPAMDQGTSSGDPSSSEPTAATIECSPINTTFFAR 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90635g00035 402 ProSitePatterns Protein kinases ATP-binding region signature. 83 107 IPR017441 GO:0005524
Stsc90635g00035 402 Gene3D Phosphorylase Kinase; domain 1 61 153 - -
Stsc90635g00035 402 PANTHER - 13 360 - -
Stsc90635g00035 402 CDD STKc_IRAK 83 350 - -
Stsc90635g00035 402 ProSitePatterns Serine/Threonine protein kinases active-site signature. 201 213 IPR008271 GO:0004672|GO:0006468
Stsc90635g00035 402 Pfam Protein kinase domain 79 348 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90635g00035 402 SMART serkin_6 77 337 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90635g00035 402 SUPERFAMILY Protein kinase-like (PK-like) 59 381 IPR011009 -
Stsc90635g00035 402 Gene3D Transferase(Phosphotransferase) domain 1 154 354 - -
Stsc90635g00035 402 FunFam probable L-type lectin-domain containing receptor kinase S.5 61 153 - -
Stsc90635g00035 402 ProSiteProfiles Protein kinase domain profile. 77 337 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90635g00035 402 FunFam probable L-type lectin-domain containing receptor kinase S.5 154 355 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90635g00035 Stsc-Chr90635 256197 257608 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90635g00035 42 366 Receptor kinase-like Gene Family AT3G53380 48.348 9.46e-100 310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Stsc90635g00035 Pkinase 1.5e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90635g00035 - - aip:107639957 682.945