Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90635g00034 ATGGCTCCACCACCATGGCTCTCCCTAACCGGCGCCACAACTGCCATTCCTATCTTCTTCCTTCTATTCATTGTCCCGCATCTGGCGCTAACTTCCCAAACCCAGCTCATTTTCGGACCATCCAATTCCTCAAAACAAATCAGCAGTAACAACATCATATACCCCATACCCCTTGCATGGATCAATTATTCATCGCCTGCTGCTCCCTCCCTACAACTCACTCCATACCCCTCCGCCGGAGACATCCCCGTCCACGAACTCTCCAACAAATCCGGTGGGATCTTCTTCACCAGATCCTTCACCCTATGGCGAAGAAAAGGCTCAAAATCAAGAGTCGCTTCCTTTAATACTTCCTTTCTCTTCAGCGTAGCTCGTGTTAACAACGTCACCGCCGGCGAAGGCATGGCGTTCGTTATTTCCCCTTCTTACTCACTTCCTCTTCCACCAAACAGCTATGGCCAATACTTAGGTCTCACTAACAACCTCACTGATGGAGACCCCTCCAACCAGATCGTAGCAATCGAATTTGATACCGTCAAGCAGGATTTCGACCCCGATGACAACCACGTAGGGCTTGACATCAACAGCGTTTTGTCTAACCTCACCGTTTCGCTTTCCCAATTCGGATTTCAGATTGCACCGAGTAATAATAATAATGATTCAGAGAGCTTGTACGCGGTGTGGGTGGATCAGAATTCTTATTTTGGATTCTCTGCTTCCAGTGGGAGCTTCTTCTACGAGGTGAACGCTATACTGAGATGGAACTTATCGGTGGAGGATATCGGTGGCGGAGGAGGAACAACTCACGTGGCGTTGATCGGAACTCTTCTTGGTTTGGAGACTGTGGTGTTTATTATGCTTGTGGCGTGTGTTGTTTTATCAGTGCGTTACGTGGTGAAGAAGATGAGGATAAGTGAGTCGGAGATGGTTCTGTTGAGGATGCTGAGGAGACTGCCGGGGACTCCGAGAGAGTTTAAGTTTGGGGAACTGAAGAAGGCTACCAACAACTTTGACGATAAGGTGAAGCTAGGGAAAGGTGGGTATGGCGTCGTGTACAAAGGGACACTGCCCAAAGAGAAGAAGGAAGTGGCCGTCAAGAAATTCTCCAGGGACAGTGTTAAAGGAATTGAAGATTTCTTGGCTGAGCTCACTATCATCAACCGTCTCTGTCACAGAAACCTTGTCTCCTTAGTCGGATGGTGTCACAAGAAGGGGGTATTGCTTTTAGTGTACGATTATATGCCTAACGGTAGCCTGGACAAGCACATTTTCTTTGATGATTGCAGCAACCAAACACCTCTGAGTTGGCAACTAAGATACAAGATAATCATAGGGGTAGTTTCTGCATTGCATTATCTCCACAACGAGTACGATCAAAAGGTGGTTCACAGAGACCTTAAATCCAGCAACATAATGCTAGACTCCGACTTCAATGCACGCCTGGGTGACTTTGGTTTGGCTCGCGCAATTGAGAATGAGAGAACCTCCTACGCAGAGTTGGAGGGAGTGGCTGTGGCTGGCACAAAGGGGTATATTGCACCGGAGTGCTTGCACACAGGTAAGGCCACGCGCGACTCAGATGTGTACGGCTTAGGGGCTGTGTTGCTCGAAGTGGTGTGTGGTCAGCGACCGTGGGCTAGGATTGAGGGATGTAACTTGTTGGTGGATTGGGTTTGGGTGCTGTATCGTGAAGGAAGGTTAATGGATGCAGTGGATGCTAGACTTGGGGATAAGTATGTGGGTGAAGAGGTAGAGATGATTTTGAAATTAGGGTTGGCATGTTCTCATCCCATTGCGAATGAGAGGCCTAAGATGAAAGATATAGTTCAGATTATATCTGGATTAATGCCTGTGCCTGACGTCCCTCTCTTCAGGCCGGCGTTTGTGTGGCCACTGTTGAGTAATTCAGGGACTGGTGGTAGTGGTGGTGATCCCACACCCACACCTACTGCTGCAACTATCGATTGCACACCCATTAACACAGCCTTTTTTGCACGTTGA 2001 0.4838 MAPPPWLSLTGATTAIPIFFLLFIVPHLALTSQTQLIFGPSNSSKQISSNNIIYPIPLAWINYSSPAAPSLQLTPYPSAGDIPVHELSNKSGGIFFTRSFTLWRRKGSKSRVASFNTSFLFSVARVNNVTAGEGMAFVISPSYSLPLPPNSYGQYLGLTNNLTDGDPSNQIVAIEFDTVKQDFDPDDNHVGLDINSVLSNLTVSLSQFGFQIAPSNNNNDSESLYAVWVDQNSYFGFSASSGSFFYEVNAILRWNLSVEDIGGGGGTTHVALIGTLLGLETVVFIMLVACVVLSVRYVVKKMRISESEMVLLRMLRRLPGTPREFKFGELKKATNNFDDKVKLGKGGYGVVYKGTLPKEKKEVAVKKFSRDSVKGIEDFLAELTIINRLCHRNLVSLVGWCHKKGVLLLVYDYMPNGSLDKHIFFDDCSNQTPLSWQLRYKIIIGVVSALHYLHNEYDQKVVHRDLKSSNIMLDSDFNARLGDFGLARAIENERTSYAELEGVAVAGTKGYIAPECLHTGKATRDSDVYGLGAVLLEVVCGQRPWARIEGCNLLVDWVWVLYREGRLMDAVDARLGDKYVGEEVEMILKLGLACSHPIANERPKMKDIVQIISGLMPVPDVPLFRPAFVWPLLSNSGTGGSGGDPTPTPTAATIDCTPINTAFFAR 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90635g00034 666 CDD STKc_IRAK 343 615 - -
Stsc90635g00034 666 CDD lectin_legume_LecRK_Arcelin_ConA 70 258 IPR001220 GO:0030246
Stsc90635g00034 666 ProSiteProfiles Protein kinase domain profile. 337 624 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90635g00034 666 Gene3D - 58 233 - -
Stsc90635g00034 666 ProSitePatterns Serine/Threonine protein kinases active-site signature. 461 473 IPR008271 GO:0004672|GO:0006468
Stsc90635g00034 666 SUPERFAMILY Concanavalin A-like lectins/glucanases 58 258 IPR013320 -
Stsc90635g00034 666 FunFam probable L-type lectin-domain containing receptor kinase S.5 322 413 - -
Stsc90635g00034 666 Gene3D Transferase(Phosphotransferase) domain 1 414 618 - -
Stsc90635g00034 666 SUPERFAMILY Protein kinase-like (PK-like) 321 629 IPR011009 -
Stsc90635g00034 666 Pfam Legume lectin domain 70 229 IPR001220 GO:0030246
Stsc90635g00034 666 Pfam Protein kinase domain 338 550 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90635g00034 666 SMART serkin_6 337 616 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90635g00034 666 PANTHER - 86 615 - -
Stsc90635g00034 666 FunFam probable L-type lectin-domain containing receptor kinase S.5 414 617 - -
Stsc90635g00034 666 ProSitePatterns Protein kinases ATP-binding region signature. 343 367 IPR017441 GO:0005524
Stsc90635g00034 666 Gene3D Phosphorylase Kinase; domain 1 322 413 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90635g00034 Stsc-Chr90635 250472 255745 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90635g00034 89 621 Receptor kinase-like Gene Family AT3G53810 37.585 1.54e-112 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Stsc90635g00034 Pkinase 1.2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90635g00034 - - ccaj:109808759 645.58