Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90635g00033 ATGTCTCCGCCACTCTCAGCCACCGCCGCCGCCGCCCTCTTCATACTCTTTGTCACCGCCACCTCAGCCGCCACCATCTTCAAAACTGAACAACACACCTGGGGCCCCTTCAACACCTCCTACTTCGACACCTTCTCCATCCTCAACGGCAACATCAACTTCGGCGCCCTCCAGGTCACGCCGGAGAGCGCCGGCAGCGTCAACCTCACCAACATCTCCGGCAGAATCTTCAATAAACAACCCTTCGCTCTATGGACCGACGATTCCGAACTCTTCTCCTTCAACACCTCCTTCCTCGTCAACGTCTTCCGCGTCAACAACGCCACCCCCGGCGAAGGCATCTCCTTCCTCATTGCTCCCAATCTCACCGTCCCTGACAACAGCTACGGCGGTTTTCTCGGCCTCACAAACTCCTCCACCGACGGCAGCTCCGATAACAAGATCGTCGCCGTCGAGCTCGACACCGTGAAGCAGGCCTACGATCCAGACAACAACCACATCGGTCTCAACATCAACTCCGTCAACTCCACCGTCGCCGTTCCACTCTCCAAATACGGTTACGAGATCTCACCAAACGGCACAGCGTTCTACATGATTTGGATCCAGTACGACGGTTCACGCAGGGTCATAACCGTTTTTATGGCTCCACAGGCCGATAAAGACGGTCCCACAGTTCCAAAACCGTCAGAACCGGTGCTGAATTCGAAGCTAGATCTTCGAAATTTGGTTAATCAGAACTCCTATTTCGGATTCTCAGCTTCAACGGGGAAAACCGTTGAATTGAACTGCGTGCTGAGATGGAACGTGTCAATACAAACCCTACCTGAGAAAAGTAGCGGCAATAATGGGAGTAACAACAAAGCGATGGAGATTGGGCTTGGTGTGGGCATTCCTATAGTGGTTCTGGGTTTAGGTGGTGTATGCGTGTTCCTGTGGTGCTGCGTTTTGAGGAAAAAGAGTGATGGTGGTTCGAATTCTCAAATTATGGGGGCGCTTAAGAGCTTGCCCGGCACACCGAGGGAGTTTAAGTACCAAGAATTGAAGAAGGCTACGAATAATTTTGATGAGAAGAACAATAAGCTTGGACAGGGTGGGTTTGGTGTGGTTTATAGAGGCACTCTTCCGCAGGAGAAGCTTCAAGTGGCGGTTAAGATGTTCTCTAGGGACAAGATGAAGAGCACTGATGATTTCTTGGCTGAACTTACAATCATCAATAGGCTCCGCCACAAGCACCTTGTTAAGTTACTTGGATGGTGCCACAAGAACGGTGTGTTACTCTTAGTGTATGAATACATGCCTAATGGAAGCTTAGACAACCACATTTTCTTTGAAGAAGGAACAAGCAAAACCCCATTAAGTTGGCATCTAAGATATAAGATCATATCAGGGGTGGCCTCTGCATTGCACTACCTACACAACGAGTATGATCAAAAAGTTATTCACAGAGATCTTAAGGCGAGTAACATAATGCTAGACTCCGACTTCAATGCCCGATTAGGCGATTTCGGTTTGGCCCGTGCAATCGAAAACGAAAAAACATCATATGCAGAGCTAGAAGGAGTGCCGGGAACAATTGGCTACATTGCCCCAGAGTGCTTCCACACGGGCAAGGCCACGCGCGAATCCGATGTGTATGGATTCGGTGCGGTCTTGCTCGAGGTGGTGTGTGGACAGAGGCCATATACAAAGAATTTGGACTATCAGTTTCTTGTAGATTGGGTTTGGCACTTGCACAGGGAGGGACAGATACTAGAGGCAGTGGATCCAAGGCTAGAGAATGAGTTTGAGGCTGAAGAAGCAGAGAGGGTGTTGAAATTGGGATTAGCATGCTCTCACCCCATTGCAAGTGAGAGGCCTAAGATGCAAACAATTGTTCAGATCATATCAGGGTCAGTTCCTGTGCCTCATGTTCCACCCTTCAAGCCATCTTTTGTGTGGCCTGCTGTGGATCTTGGAAGCTTTACAAGTGATCTCACATCACAAACAATCACTGAGTACACTCCAGTTAACACTCATTCCTCTATGAATCTTGGATTCTCAAGTAATAATAACAGTTCCTTGTAA 2064 0.4898 MSPPLSATAAAALFILFVTATSAATIFKTEQHTWGPFNTSYFDTFSILNGNINFGALQVTPESAGSVNLTNISGRIFNKQPFALWTDDSELFSFNTSFLVNVFRVNNATPGEGISFLIAPNLTVPDNSYGGFLGLTNSSTDGSSDNKIVAVELDTVKQAYDPDNNHIGLNINSVNSTVAVPLSKYGYEISPNGTAFYMIWIQYDGSRRVITVFMAPQADKDGPTVPKPSEPVLNSKLDLRNLVNQNSYFGFSASTGKTVELNCVLRWNVSIQTLPEKSSGNNGSNNKAMEIGLGVGIPIVVLGLGGVCVFLWCCVLRKKSDGGSNSQIMGALKSLPGTPREFKYQELKKATNNFDEKNNKLGQGGFGVVYRGTLPQEKLQVAVKMFSRDKMKSTDDFLAELTIINRLRHKHLVKLLGWCHKNGVLLLVYEYMPNGSLDNHIFFEEGTSKTPLSWHLRYKIISGVASALHYLHNEYDQKVIHRDLKASNIMLDSDFNARLGDFGLARAIENEKTSYAELEGVPGTIGYIAPECFHTGKATRESDVYGFGAVLLEVVCGQRPYTKNLDYQFLVDWVWHLHREGQILEAVDPRLENEFEAEEAERVLKLGLACSHPIASERPKMQTIVQIISGSVPVPHVPPFKPSFVWPAVDLGSFTSDLTSQTITEYTPVNTHSSMNLGFSSNNNSSL 687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90635g00033 687 Gene3D Phosphorylase Kinase; domain 1 339 431 - -
Stsc90635g00033 687 Pfam Protein tyrosine and serine/threonine kinase 358 627 IPR001245 GO:0004672|GO:0006468
Stsc90635g00033 687 Gene3D - 37 290 - -
Stsc90635g00033 687 ProSitePatterns Serine/Threonine protein kinases active-site signature. 479 491 IPR008271 GO:0004672|GO:0006468
Stsc90635g00033 687 SMART serkin_6 355 615 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90635g00033 687 Pfam Legume lectin domain 51 277 IPR001220 GO:0030246
Stsc90635g00033 687 FunFam probable L-type lectin-domain containing receptor kinase S.5 432 633 - -
Stsc90635g00033 687 SUPERFAMILY Protein kinase-like (PK-like) 336 650 IPR011009 -
Stsc90635g00033 687 PANTHER - 59 638 - -
Stsc90635g00033 687 ProSiteProfiles Protein kinase domain profile. 355 637 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90635g00033 687 SUPERFAMILY Concanavalin A-like lectins/glucanases 52 273 IPR013320 -
Stsc90635g00033 687 CDD lectin_legume_LecRK_Arcelin_ConA 42 271 IPR001220 GO:0030246
Stsc90635g00033 687 Gene3D Transferase(Phosphotransferase) domain 1 432 632 - -
Stsc90635g00033 687 FunFam probable L-type lectin-domain containing receptor kinase S.5 339 431 - -
Stsc90635g00033 687 CDD STKc_IRAK 361 628 - -
Stsc90635g00033 687 ProSitePatterns Legume lectins beta-chain signature. 149 155 IPR019825 -
Stsc90635g00033 687 ProSitePatterns Protein kinases ATP-binding region signature. 361 384 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90635g00033 Stsc-Chr90635 244907 248703 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90635g00033 73 644 Receptor kinase-like Gene Family AT5G55830 38.158 1.28e-121 376
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Stsc90635g00033 PK_Tyr_Ser-Thr 4.1e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90635g00033 - - gmx:100784558 913.679