Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90635g00024 ATGAGTAATGTGCAAGAAAATGAGGAAGTTGGCCAGGGTGTGTCCTCGGCTATGGAAGAAAACCAACAGTTAGTTGATGCTCAGGTTCAAATTCAACCTGATGTTTCTTCTACTTCTGTTCCAGTAGAGAAAAATTCAAACCACGTCAAAAACGGATCAAAGGAGCCACCTTCTGAGTCTAGGGCAGAGCCATCTGCTGAGTCTAAGGCTGAGAAACCTGCTGAGGCTTTGGCAGAACCGCTTCCTATGGCAAAGGCAGAGCCGCCTTCCGAGGCAAAGACAGAGCCACCGGCTGAGGTGAAAGCAGAGCCACCTCCTGAGGTGAAGGCTGAGCAACCTCCTACAGCTATGTCGGAGCCACCTGCCATGGCTAAGTCAGAGTTACCTTCCCAGGCTACAGCAGTACCACCTGCCCAATCTGAGGCAGAGACTCCTTCCAAGCCTAAGGCAGAGCCTCCTTCTGAGGATAAATCTGAGCAACCTTTCAAGGCTAAATCTGTGCCACCTGCTGAAGATGTGTCAGCAACAGATGCTGAGGACAAGGCTGAGCCACCACTTGAGGAAAAAAGTGTGAATCAAGAGGGGGTTCCTGAGGATATTCCAAAGCAAGATATTCAAAGTAGTGAAAATACTCTTCAGTCAGTTTCAGCAGAAGTTGATGCTCTGGTTTTGAATAGAACTGAGCGTGTCAAAGCTTCTGACCCGATGGAGGAAGATAGTGAATTTCCTCAGAGTAATAATGGTACTGAGGATGATGTGAATGTTTGTCCAAATAATGCTGATATTGCTGAAACGTCAGCAGAGGTGAAGCCTGAAGGTGGTGAAGTGGCTAATGCTAAAAGTTGCAACCATGTTGAACCCATACCATCGGGGCATGATGAGCCTTCTATGCTGCAAGCTGTTCCTGCTGATGCAGATGTTGAAATGAAGAATGTATCAGAAGTTGAGAATAAGACTGATGAAAATCAAGCTATTTTAACTGCAGACAATGGGAATGAAAACTCAAGTCACATGCTTTTCCTGGACGCTGACCATTGTTATGATGGGAATGAGTCAGGGACAGAGGAAGAGCAATCGGCATTCATGAAGGAGCTTGAGAATTTCTTTAGGGAGAGGAGCATGGAGTTCAAACCTCCCAAATTTTATGGAGAAGGACTTAATTGCCTTAAGTTATGGCGAGCTGTAACAAGATTGGGTGGTTATGACAAGGTAACCACATGTAAGCTATGGCGGCAAGTGGGAGAATCTTTCAAACCTCCTAAGACATGCACCACAGTTTCATGGACTTTCCGTGGATTTTATGAGAAGGCACTTCTTGATTATGAAAAACATAAGATAAAAGGTGGTGAGCTGAGTGTTCCAATTCCTTCACAACCAGAGCCTATGAATATTGAAAATCAGTCTTCAGCACCAGGTAGAGCACGTCGAGATGCTGCAGCACGCGCTATGCAGGGTTGGCACTCACAACGTCTACTAGGCAATGGTGAAGTTGGTGACCCCATTATTAAGGATAGGAATTCTGTGTCTATGCAGAAGCGTGAAAAACAGCAGCTTAAAAGCATCAACTTACTTAAACGCAAGAAACCATCATATATGGACAATGCAGTCAAAGCTGCACGTAGTAAACTGGCTAAACCACAATTGGACACAGCTGTGATTGATATTGGACCTTCTGCTGATTGGGTAAAAATCAATGTGCAAAAAACTAAGGATTGTTTCGAGGTGTATGCTTTAGTTCCTGGCCTACTGCGAGAAGAGGTGCGTGTTCAATCAGACCCAGCAGGACGTTTAGTTATTAGTGGTGAGCCTGAGCATCCCAATAATCCTTGGGGTGTAACACCTTTCAAAAAGGTTGTAAGCTTGCCCTCAAGAATTGATCCTCATCAGACATCAGCAGTGGTGACTCTGCATGGACAGTTGTTTGTTCGTGTCCCTTTCGAGCAATCAGAATAG 1953 0.4526 MSNVQENEEVGQGVSSAMEENQQLVDAQVQIQPDVSSTSVPVEKNSNHVKNGSKEPPSESRAEPSAESKAEKPAEALAEPLPMAKAEPPSEAKTEPPAEVKAEPPPEVKAEQPPTAMSEPPAMAKSELPSQATAVPPAQSEAETPSKPKAEPPSEDKSEQPFKAKSVPPAEDVSATDAEDKAEPPLEEKSVNQEGVPEDIPKQDIQSSENTLQSVSAEVDALVLNRTERVKASDPMEEDSEFPQSNNGTEDDVNVCPNNADIAETSAEVKPEGGEVANAKSCNHVEPIPSGHDEPSMLQAVPADADVEMKNVSEVENKTDENQAILTADNGNENSSHMLFLDADHCYDGNESGTEEEQSAFMKELENFFRERSMEFKPPKFYGEGLNCLKLWRAVTRLGGYDKVTTCKLWRQVGESFKPPKTCTTVSWTFRGFYEKALLDYEKHKIKGGELSVPIPSQPEPMNIENQSSAPGRARRDAAARAMQGWHSQRLLGNGEVGDPIIKDRNSVSMQKREKQQLKSINLLKRKKPSYMDNAVKAARSKLAKPQLDTAVIDIGPSADWVKINVQKTKDCFEVYALVPGLLREEVRVQSDPAGRLVISGEPEHPNNPWGVTPFKKVVSLPSRIDPHQTSAVVTLHGQLFVRVPFEQSE 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90635g00024 650 SMART bright_3 356 447 IPR001606 GO:0003677
Stsc90635g00024 650 Gene3D - 355 452 IPR036431 GO:0003677
Stsc90635g00024 650 Pfam Hsp20/alpha crystallin family 567 649 IPR002068 -
Stsc90635g00024 650 Pfam ARID/BRIGHT DNA binding domain 358 442 IPR001606 GO:0003677
Stsc90635g00024 650 MobiDBLite consensus disorder prediction 1 275 - -
Stsc90635g00024 650 FunFam AT-rich interactive domain-containing protein 3 355 454 - -
Stsc90635g00024 650 SUPERFAMILY HSP20-like chaperones 558 646 IPR008978 -
Stsc90635g00024 650 MobiDBLite consensus disorder prediction 224 238 - -
Stsc90635g00024 650 SUPERFAMILY ARID-like 350 453 IPR036431 GO:0003677
Stsc90635g00024 650 MobiDBLite consensus disorder prediction 203 220 - -
Stsc90635g00024 650 MobiDBLite consensus disorder prediction 1 47 - -
Stsc90635g00024 650 MobiDBLite consensus disorder prediction 174 195 - -
Stsc90635g00024 650 Gene3D - 547 650 IPR008978 -
Stsc90635g00024 650 MobiDBLite consensus disorder prediction 239 254 - -
Stsc90635g00024 650 MobiDBLite consensus disorder prediction 148 162 - -
Stsc90635g00024 650 ProSiteProfiles ARID domain profile. 355 446 IPR001606 GO:0003677
Stsc90635g00024 650 SMART ARID_2 352 442 - -
Stsc90635g00024 650 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 550 650 IPR002068 -
Stsc90635g00024 650 FunFam AT-rich interactive domain-containing protein 3 542 650 - -
Stsc90635g00024 650 CDD ARID 357 442 - -
Stsc90635g00024 650 CDD ACD_sHsps-like 565 645 - -
Stsc90635g00024 650 MobiDBLite consensus disorder prediction 48 74 - -
Stsc90635g00024 650 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 176 649 IPR045147 GO:0006357
Stsc90635g00024 650 MobiDBLite consensus disorder prediction 452 472 - -
Stsc90635g00024 650 MobiDBLite consensus disorder prediction 92 106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90635g00024 Stsc-Chr90635 196330 205447 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90635g00024 350 648 ARID Transcription Factor Family AT1G76510 63.816 5.17e-127 380
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Stsc90635g00024 HSP20 2.1e-05 CL0190
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90635g00024 - - lang:109348972 710.294