Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90635g00015 ATGACACGTACCTTTAGATTCCTCACATCCACCGCCGACAACGCCACCGCCGTTGCCGCCGCTGAGCCTCCCGAGCCTGTGGAGCTCGAATCTGACTTCGTCGTCATCCTCGCAGCTCTCCTCTGCGCCCTCATATGCGTCGTCGGTCTCGTCGCCGTCGCCAGGTGCGCCTGGCTCCGCCGAGGCTCCGCCGCTGGATCCTCGCCGCGCCAGTCTCTCGCCAACAAAGGATTGAAGAAGAAGGTTCTCCAGTCGCTACCGAAATTCGCGTACGTTGACGGAGGAAATCCTGAAGTCGGCGGCGCCGGGTGGATGGTGACGGCAGAGTGCGCGATCTGCCTTTCGGAGTTCGCCTCCGGCGACGAGATCCGCGTGCTCCCGCAGTGCGGACACGGATTCCACGTGGCGTGCATAGACACGTGGCTTGGATCACACTCGTCTTGCCCTTCCTGCCGACAGGTTTTGGCGGTGGCGAGGTGTCAGAAGTGCGGGCGGTTTCCGGCGAACGGAGCTGGCAGCACCTCCGCAAGATCGGCGATTAATGAACCTGAGGTGAAGTCGAGAGAAGACGGCAATGCCGTTTTTAGTAACAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAACAGTAACAGTAATAGCGGCGGTTTCAGCGGTAGTGGAAGCAGTAGCAACAGCAGTAATAGTAATACCAGCAATAATAATGATGATTTCTTGCCTTGA 747 0.5422 MTRTFRFLTSTADNATAVAAAEPPEPVELESDFVVILAALLCALICVVGLVAVARCAWLRRGSAAGSSPRQSLANKGLKKKVLQSLPKFAYVDGGNPEVGGAGWMVTAECAICLSEFASGDEIRVLPQCGHGFHVACIDTWLGSHSSCPSCRQVLAVARCQKCGRFPANGAGSTSARSAINEPEVKSREDGNAVFSNNNNNNNNNNNNNNNNNNNNNSNSNSGGFSGSGSSSNSSNSNTSNNNDDFLP 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90635g00015 248 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 66 157 IPR013083 -
Stsc90635g00015 248 ProSiteProfiles Zinc finger RING-type profile. 110 152 IPR001841 -
Stsc90635g00015 248 FunFam E3 ubiquitin-protein ligase ATL6 67 158 - -
Stsc90635g00015 248 SMART ring_2 110 151 IPR001841 -
Stsc90635g00015 248 Pfam Ring finger domain 109 152 IPR001841 -
Stsc90635g00015 248 CDD RING-H2_EL5-like 109 152 - -
Stsc90635g00015 248 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 25 164 - -
Stsc90635g00015 248 SMART FANCL_C_2 106 160 - -
Stsc90635g00015 248 MobiDBLite consensus disorder prediction 191 248 - -
Stsc90635g00015 248 SUPERFAMILY RING/U-box 109 157 - -
Stsc90635g00015 248 MobiDBLite consensus disorder prediction 169 248 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90635g00015 Stsc-Chr90635 121739 122969 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90635g00015 5 191 C3H Transcription Factor Family AT1G76410 55.670 1.15e-63 195
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90635g00015 - - adu:107487390 319.701