Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90635g00011 ATGAGCCCTGAAGCAACCGAGGAAGAGATTACAAATGTGCTTGTACAGGTGGCTTTGGCAGAATCCCGGGTTATAGTTGTTCACATCAACATTCTCTGGGGCCTCAAGGTTTTTGATATTGCAAAGAGACTTGGGATGATGGGAAGTGGGTATGTCTGGCTAGCCACTACTTTCCTTTCTGGTATACTTGAAATGAATACTCCCTTCCCTCCAGAATTAACTAATAATATTCAAGGTGTTATTACATTTCGTGTGTATACACCAGATTCCGAACTCAAAAGAAGGTTTGCTTCTAAATGGAAAAATTTGACTCAAGGGGAGACTGCTAATGGCCCCCTTGGACTAAGCGCTTTAGGTCTCTATGCATATGATACTGTTTTTGCACTTGCACATGCACTAGGTGCATTTTTCAAGCAAGGGAAGCGAATCACTTTCTCAAGGGATCCAAAATTATCATTACCACAGGGAGACCACTTGAGGCTTGATACATTGAACATCTTTAATGAAGGAAATTTTTTGCGGCAAAACATATATGAAGTTAACATGACCGGTGTGACAGGTACATTCAGGTATACATCTGACAGAGACCTTGTAAATCCTTCGTATGAAATCATAAATGTGGTTGGAACAGGATTTAGAAGGATTGGTTATTGGTCCAATTACTCTGGATTATCAGTTGATCCTCCAGAAGCTCTTTCTCCCAAACCAGTCAATAATTCCAGCAGGGCAGGTAAAACTTTACTCCCTGTGATTTGGCCTGGAGACACTACCCAAAAGCCTCGTGGTTGGGTTTTTCCAAACAGTGGAAGGTTATTGAAAATTGGAGTTCCAATAAGTGTTAGTTACCATGAATTTGTGTCACAAGTACCAGGCACCGACACGTTTGAGGGATTCTGCATTGAGGTATTTCTTGCTGCTGTGAATTTGTTGCCTTATGCTGTCCCCTATAAGTTTATCCCGTTTGGAGATGACCGCAGCAATCCTAGCGCCACCGAGCTTGTTCGCCTGATCACAACGGGTGAATTTGATGGTGCTGTTGGTGATATTACAATTACTACAGAAAGAACAAAGATGGTGGATTTTACACAACCATATATTGAGTCTGGTCTAGTGGTGGTAGCACCAGTTAAGAAGTCAGATTCTAGTGCTTGGGCGTTTTTGGCCCCATTTACGCCAATGATGTGGGCAGTCACAGCTATCTTTTTTCTATTTGTGGGAGCTGTTGTTTGGATATTGGAGCATAGAGTTAATGATGAATTTAGGGGCCCTCCTAAACAACAAATAGTAACTACTTTATGGTTTAGTTTTTCAACCATGTTCTTTTCACACAGGGAAAATACAGTGAGCACTCTTGGTCGTTTTGTGCTGATTATATGGCTATTTGTAGTTCTTATAGTTAACTCGAGTTATACAGCGAGTCTGACCTCAATACTCACCGTGCAACAACTTTCTTCGCCCATAAAAGGAATCGAAAGTTTAGTGAATGGCAAGGATCCTATTGGCTACACAGAAGGTTCTTTTGCTAAAAACTATTTAATTCAGGAAATTGGCATTAACGAATCCAGGCTTGTCGCTCTGAACACGCCAGAGGAAGCTGCGAATGCACTTAAAAAGGGACCCCATAATGGCGGCATCTGTGCATATATTGATGAGCGTGCTTATATGGAGCTCTTCCTTTCAAGCCGGTGTGATTTCACTATTATAGGTCAAGAGTTCACTAGAGATGGTTGGGGATTTGCTTTTCCACGAGACTCGCCATTAGCAATAGACCTGTCTACCGCAATTCTTGAGATGGCAGAGAATGGAGACCTACAAAAGATCCACGACAAATGGCTTCTTCGCAGTGCTTGCTTATCACAAGGCACAAAGCTTGAAGTGGAAAGACTAAACCTCAAAAGCTTCTGGGGCCTCTACCTGATCTGTGGCTTTGCCTGCTTCCTTGCTCTCTTCATATATCTCATACAGATGCTTAGGCAGTACAGCAAGCACTCCTCAGAGGAAATTCACCCTGCTGCACAGAGCTCATCATCAGGGTCTTCACGACTTCGGAGTTTCCTTTCATTTGTGGACGAAAAGGAAGAGACAGTTAAGCACAGGTCCAAGCGAAGGCAAATGGAGATGAACTCATGCCGAAATGGTGTAGTTGGATCATCCATTAGCTTTAGTTCCAACAAAGACTATGCTCGGTCATCTCCATACAAAAGTGATGGTGGTGGTGACGCCTGA 2226 0.4281 MSPEATEEEITNVLVQVALAESRVIVVHINILWGLKVFDIAKRLGMMGSGYVWLATTFLSGILEMNTPFPPELTNNIQGVITFRVYTPDSELKRRFASKWKNLTQGETANGPLGLSALGLYAYDTVFALAHALGAFFKQGKRITFSRDPKLSLPQGDHLRLDTLNIFNEGNFLRQNIYEVNMTGVTGTFRYTSDRDLVNPSYEIINVVGTGFRRIGYWSNYSGLSVDPPEALSPKPVNNSSRAGKTLLPVIWPGDTTQKPRGWVFPNSGRLLKIGVPISVSYHEFVSQVPGTDTFEGFCIEVFLAAVNLLPYAVPYKFIPFGDDRSNPSATELVRLITTGEFDGAVGDITITTERTKMVDFTQPYIESGLVVVAPVKKSDSSAWAFLAPFTPMMWAVTAIFFLFVGAVVWILEHRVNDEFRGPPKQQIVTTLWFSFSTMFFSHRENTVSTLGRFVLIIWLFVVLIVNSSYTASLTSILTVQQLSSPIKGIESLVNGKDPIGYTEGSFAKNYLIQEIGINESRLVALNTPEEAANALKKGPHNGGICAYIDERAYMELFLSSRCDFTIIGQEFTRDGWGFAFPRDSPLAIDLSTAILEMAENGDLQKIHDKWLLRSACLSQGTKLEVERLNLKSFWGLYLICGFACFLALFIYLIQMLRQYSKHSSEEIHPAAQSSSSGSSRLRSFLSFVDEKEETVKHRSKRRQMEMNSCRNGVVGSSISFSSNKDYARSSPYKSDGGGDA 741
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90635g00011 741 Gene3D - 85 199 - -
Stsc90635g00011 741 Gene3D - 269 382 - -
Stsc90635g00011 741 SMART GluR_14 273 614 IPR001320 GO:0015276|GO:0016020
Stsc90635g00011 741 FunFam Glutamate receptor 383 513 - -
Stsc90635g00011 741 Pfam Ligand-gated ion channel 613 645 IPR001320 GO:0015276|GO:0016020
Stsc90635g00011 741 FunFam Glutamate receptor 509 616 - -
Stsc90635g00011 741 CDD GluR_Plant 272 612 - -
Stsc90635g00011 741 Gene3D - 383 510 - -
Stsc90635g00011 741 MobiDBLite consensus disorder prediction 710 730 - -
Stsc90635g00011 741 Pfam Bacterial extracellular solute-binding proteins, family 3 292 612 IPR001638 -
Stsc90635g00011 741 SUPERFAMILY Periplasmic binding protein-like II 246 614 - -
Stsc90635g00011 741 Gene3D - 7 224 - -
Stsc90635g00011 741 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 11 675 IPR015683 -
Stsc90635g00011 741 MobiDBLite consensus disorder prediction 694 741 - -
Stsc90635g00011 741 FunFam Glutamate receptor 267 383 - -
Stsc90635g00011 741 SUPERFAMILY Periplasmic binding protein-like I 6 264 IPR028082 -
Stsc90635g00011 741 Pfam Receptor family ligand binding region 5 209 IPR001828 -
Stsc90635g00011 741 Gene3D - 559 619 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90635g00011 Stsc-Chr90635 82543 85833 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90635g00011 1 706 Ion Channels AT3G51480 57.709 0.0 868
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90635g00011 K05387 - gmx:100793320 1091.64