Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90635g00010 ATGGTTAAGGTTTGGCTCTTGCTGTTGATTCTTCACTCCAATGGATTCTTCTATTCAAATGGGGCAGACATGCAAAATTCCACATCAGTACCAAGGGTTGTAAATATTGGGGCTCTCTTCTCTTTCAATACCTCTTTTGGTAGAAGTGTAAAATATGCTATAAAGGCTGCAGTTGATGATGTAAATTCTGATCCATCTATTCTTGGTAAAACAAAGCTGAATCTCATACTTCAAGAGGATTCTAAATACAAAGGTTTTCTTAGCATTTCTGAGGTTTTGCAGGTTGCAACTAAACATACTGTGGCTATAATTGGTCCCCAATCATCTGTAACTGCTCATGTGATAGCTCATATTGCAAATGAGCTCCAAGTTCCTCTGCTATCATTTTCGGCTTTAGACCCTACCCTTCTTTCACTTCAGTTCCCATTCTTTATTAGCACAGGTCATAGTGATCTTTATGTGATGACTGCAATAGCAGACTTTGTTGACCACTTTGGATGGAAAGATGTTATTGCTTTCTATGTGGATGATGACAATGGGAGGAATGGAATCGGAGCTCTAGGTGATAAGCTCGCCGAGAGGCGCTGCAGGATCTCCTTTAAGGCTGCTATAAGCCCTGATGCAACTAATGAGGAGATTACTAATGTGCTTGTTCAGGTGGCTTTGGCAGAATCTAGAGTTATAGTTCTTCACCTCAGTACTTCTTGGCGCTTCAGGGTTTTCAGTCTTGCAAAGAATCTTGGGATGATGGAAAGTGGTTATGTCTGGATAGGTACTACTTTTCTTTCTGCTGTTCTTGATATGGAAAGTCCGTTGCCTCCAGATGAAATAGATGATATTCAAGGAGTTATCACGTTTCGTGTGTACACACCGGATTCTGGACTCAAAAGAAGGTTTGTTTCTGAGTGGAAGAATCTGACTCAAGCTGATAGTGCTAACAATGGCCCTCTTGGATTCACTCCTTTGATTCTATATGCATATGATACTGTTTATGCTCTTGCACATGCACTTGATTCATTTTTCAAACAAGGGAACAGAATCACTTTCTCAAATGATTCAAAGTTATCAGCATTAAGTGGTGACAACTTACATCTTGATGCTTTGAACATCTTCAATGAAGGACCTGCCTTGCGTAGCAGCATTTATGGAGTTAACATGACTGGTGTGACAGGTCCATTCAGGTATACATCTGATGAAAATCTTGCCAATCCTGCATATGAGATCATCAATGTCATTGGAACCGGGTCTAGGAAGATTGGTTATTGGTCTAACTACTCTGGATTATCAGTGGTTCCTCCAGATGCTCTTTATTCCAAGCCAGTTAATAATTCTAAGGCAAGTAAGACATTACTTCCGGTGATTTGGCCCGGTGACACTGACCAAAAGCCTCGCGGTTGGGTTTTTCCCAACAGTGGAAGGCTATTAAGGATTGGAGTACCAATAAGGGTTAGTTACATGGAATTTGTCTCTCAGGTAAAAGGCACTGATATGTTTCAGGGATTCTGCATTGATGTGTTTCTTGCTGCAGTGAATTTGTTGCCTTATGCTGTCCCCTATAAGTTTGTTCCCTATGGCGATGGCCACATCAATCCTAGCGCCACTGACCTTGTCCGTCGGATCACAACCGGTGAATTTGATGGTGCTGTTGGTGACATTGCCATTACTACAGAAAGAACAAGGATGGTGGATTTTACACAGCCTTATATTGAGTCTGGTCTAGTTGTAGTAGCACCAGTTAGGAAGGCAGAATCCAATGCTTGGGCGTTTTTGTCGCCGTTTACACCGATGATGTGGGCTGTCACAGCTATGTTTTTCTTATTTGTTGGAGCTGTTGTTTGGATATTGGAGCATAGAGTTAATGATGACTTTAGAGGACCTCCCAAGAAACAAGTAGTTACTATCTTATGGTTCAGTTTTTCAACTATGTTCTTTTCACACAAGGAAAATACAGTGAGCACGCTTGGTCGCTTGGTGCTGATTATATGGTTATTTGTAGTTCTTATAGTTAACTCGAGTTACACAGCGAGTCTGACCTCAATCCTCACTGTGCAACAACTCTATTCACCCATCAAAGGCATTGACAGTTTAGCAAATAGCAAGGATCCTATTGGTTACACCCAAGGTTCTTTTGCTAAGAATTATTTGATTCAGGAGATCGGCATTGCTGAAGTGAGGCTTGTTCCTTTGAACACGCCGGAGGAAGCTGCGAATGCACTTAAAAAGGGTCCCCATGGTGGTGGTGTTTCTGCATACATTGATGAGCGTTCCTACATAGAGCTCTTCCTTTCAAGCCGGTGTGATTTCACTGTTATTGGTCAAGAGTTCACTAGAGATGGTTGGGGATTTGCCTTTCCGCGAGACTCACCATTAGCAATAGACCTGTCAACTGCCATTCTGGAAATGGCAGAGAATGGAGACCTGCAAAGGATCCATGACAAATGGCTTCTTCGCAGCGCTTGCTTATCACAAGGGACAAAGCTTGAAGTTGAAAGACTAAACCTTCAAAGCTTCTGGGGCCTCTATCTGCTATGTGGCTTTGCCTGCTTCATTGCTCTCTTCATTTATCTCATACAGGTCACTAGGCAGTACTTCAAGCATGGCACAGATGAGCTTGACCCTGCTGATCAGAGCTCATCTTCAGGATCGGCGCGCCTTCGGAGTTTCCTTTCATTTGTAGATGAAAAGGAAGAGACAGTTAAGAGCCGCTCCAAGAGAAGGCAAATGGAGAGGATCTCATACCGGAGCAGTATTGGATCATCATCCATTAGCTCAAACAAAGACTATGCTCAATCTTCTCCATACAAACATGATTCTGCTAATGATGCTCAATCTTCTCCATACAAAAGTGATGGTGCTAATGAAGCATGA 2868 0.4236 MVKVWLLLLILHSNGFFYSNGADMQNSTSVPRVVNIGALFSFNTSFGRSVKYAIKAAVDDVNSDPSILGKTKLNLILQEDSKYKGFLSISEVLQVATKHTVAIIGPQSSVTAHVIAHIANELQVPLLSFSALDPTLLSLQFPFFISTGHSDLYVMTAIADFVDHFGWKDVIAFYVDDDNGRNGIGALGDKLAERRCRISFKAAISPDATNEEITNVLVQVALAESRVIVLHLSTSWRFRVFSLAKNLGMMESGYVWIGTTFLSAVLDMESPLPPDEIDDIQGVITFRVYTPDSGLKRRFVSEWKNLTQADSANNGPLGFTPLILYAYDTVYALAHALDSFFKQGNRITFSNDSKLSALSGDNLHLDALNIFNEGPALRSSIYGVNMTGVTGPFRYTSDENLANPAYEIINVIGTGSRKIGYWSNYSGLSVVPPDALYSKPVNNSKASKTLLPVIWPGDTDQKPRGWVFPNSGRLLRIGVPIRVSYMEFVSQVKGTDMFQGFCIDVFLAAVNLLPYAVPYKFVPYGDGHINPSATDLVRRITTGEFDGAVGDIAITTERTRMVDFTQPYIESGLVVVAPVRKAESNAWAFLSPFTPMMWAVTAMFFLFVGAVVWILEHRVNDDFRGPPKKQVVTILWFSFSTMFFSHKENTVSTLGRLVLIIWLFVVLIVNSSYTASLTSILTVQQLYSPIKGIDSLANSKDPIGYTQGSFAKNYLIQEIGIAEVRLVPLNTPEEAANALKKGPHGGGVSAYIDERSYIELFLSSRCDFTVIGQEFTRDGWGFAFPRDSPLAIDLSTAILEMAENGDLQRIHDKWLLRSACLSQGTKLEVERLNLQSFWGLYLLCGFACFIALFIYLIQVTRQYFKHGTDELDPADQSSSSGSARLRSFLSFVDEKEETVKSRSKRRQMERISYRSSIGSSSISSNKDYAQSSPYKHDSANDAQSSPYKSDGANEA 955
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90635g00010 955 Gene3D - 150 428 - -
Stsc90635g00010 955 Gene3D - 470 585 - -
Stsc90635g00010 955 SUPERFAMILY Periplasmic binding protein-like I 29 467 IPR028082 -
Stsc90635g00010 955 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 34 895 IPR015683 -
Stsc90635g00010 955 Pfam Bacterial extracellular solute-binding proteins, family 3 495 815 IPR001638 -
Stsc90635g00010 955 CDD GluR_Plant 475 815 - -
Stsc90635g00010 955 Pfam Receptor family ligand binding region 52 413 IPR001828 -
Stsc90635g00010 955 FunFam Glutamate receptor 586 716 - -
Stsc90635g00010 955 CDD PBP1_GABAb_receptor_plant 35 432 IPR044440 -
Stsc90635g00010 955 MobiDBLite consensus disorder prediction 912 955 - -
Stsc90635g00010 955 Gene3D - 53 403 - -
Stsc90635g00010 955 PIRSF IGluLR_plant 1 954 IPR017103 -
Stsc90635g00010 955 Gene3D - 586 716 - -
Stsc90635g00010 955 FunFam Glutamate receptor 150 309 - -
Stsc90635g00010 955 SUPERFAMILY Periplasmic binding protein-like II 449 817 - -
Stsc90635g00010 955 MobiDBLite consensus disorder prediction 898 955 - -
Stsc90635g00010 955 FunFam Glutamate receptor 470 586 - -
Stsc90635g00010 955 SMART GluR_14 476 817 IPR001320 GO:0015276|GO:0016020
Stsc90635g00010 955 Gene3D - 758 822 - -
Stsc90635g00010 955 Pfam Ligand-gated ion channel 816 848 IPR001320 GO:0015276|GO:0016020
Stsc90635g00010 955 FunFam Glutamate receptor 712 819 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90635g00010 Stsc-Chr90635 75792 80135 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90635g00010 5 916 Ion Channels AT3G51480 57.143 0.0 1091
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90635g00010 K05387 - gmx:100793320 1412.51