Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90635g00007 ATGTCGTGCTCATCGTCGTCGGGGTCGGAGGAAGACGATGAGGGTTTCGATTCGTACCGGAAAGGAGGGTACCATGCCGTCAGAATCGGCGATCAGTTCGCCGGAGGAAGGTACATAGCTCAGAGGAAGCTCGGTTGGGGCCAATTCTCCACCGTCTGGCTTGCTTATGATACCACCAATTCCTCATATGTTGCTCTCAAGATCCAAAAAAGTGCTGCCCAGTTTGTTCAGGCAGCACTTCATGAGATTGATGTTCTTTCATACATTGCTAAGGGTGACCCTTCAAATTCGAAGTATGTTGTCCAATTAATTGACCACTTTAAACACGCTGGCCCGAATGGGCAGCATCTTTGCATGGTCCTCGAGTTTCTTGGTGATAGCTTGCTACGATTGATCAAATATAATCATTACAAATGCCTTCCATTGAATAAAGTTAGGGAAATGTGCAAATACATTTTGACTGGATTGGATTACTTGCACAGAGAACTTGGTATAATCCACACTGACCTCAAACCTGAAAACATTCTTTTAGTTTCAACCATTGATGCTGCCAAAGACCCTTTTAAATCTGGACAATCCCCAATTCTAGAGAGGCCCGAGGGAGGCATAAACGGTGGTGTCACAAGTCTTATTGAGAAAAGATTGAGAAGGAGAGCTAAGAGGGCTGTTGCTAAGATATCCGAGAAAAGATCCTCAATGGGTGTAGCTGGAGATGAGCAAAAATCTACTAGAAATATTGATGGGATTGATATGAGATGCAAGATCGTAGATTTCGGAAATGCATGTTGGGCTGATAAGCAGTTTGCTGAAGAAATACAGACAAGGCAATACAGAGCTCCTGAAGTTATACTGCAGTCTGGCTATTCCTTCTCTGTCGACATGTGGTCTTTTGCTTGCATTGCTTTTGAGCTTGCCACTGGTGATATGTTGTTTACGCCCAAGGGAGGTCAAGGTTTTAGCGAAGATGAGGATCATCTTGCCCTGATGATGGAGCTCCTCGGAAAGATGCCCCGGAAGATTGCGATTTCTGGAGCACAATCCAAGGAATACTTCGATAGGCACGGTGATCTGAAAAGGATCCGGAGGCTAAAATTTTGGCCGCTTGACAAATTGCTAATTGATAGATATAAGTTTCCAGAGAGTGACGCACGTGAGTTTGCCGAATTTCTTACCCCACTTCTTGATTTCGCGCCAGAGAAGCGACCAACTGCACAACAGTGCTTGCAACACCCGTGGATGAATTGCGATACATCTCCGAATGAGAATGAGAATGAATCTAGTGTGGAAACCGTGGAAGTTGGGATGAGCAACCTTAAACTCAAGGTGGGAAAGTGA 1335 0.4494 MSCSSSSGSEEDDEGFDSYRKGGYHAVRIGDQFAGGRYIAQRKLGWGQFSTVWLAYDTTNSSYVALKIQKSAAQFVQAALHEIDVLSYIAKGDPSNSKYVVQLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYNHYKCLPLNKVREMCKYILTGLDYLHRELGIIHTDLKPENILLVSTIDAAKDPFKSGQSPILERPEGGINGGVTSLIEKRLRRRAKRAVAKISEKRSSMGVAGDEQKSTRNIDGIDMRCKIVDFGNACWADKQFAEEIQTRQYRAPEVILQSGYSFSVDMWSFACIAFELATGDMLFTPKGGQGFSEDEDHLALMMELLGKMPRKIAISGAQSKEYFDRHGDLKRIRRLKFWPLDKLLIDRYKFPESDAREFAEFLTPLLDFAPEKRPTAQQCLQHPWMNCDTSPNENENESSVETVEVGMSNLKLKVGK 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90635g00007 444 Pfam Protein kinase domain 39 179 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90635g00007 444 Pfam Protein kinase domain 252 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90635g00007 444 ProSitePatterns Protein kinases ATP-binding region signature. 44 67 IPR017441 GO:0005524
Stsc90635g00007 444 SMART serkin_6 38 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90635g00007 444 CDD STKc_SRPK 27 413 - -
Stsc90635g00007 444 Gene3D Transferase(Phosphotransferase) domain 1 92 413 - -
Stsc90635g00007 444 FunFam Protein kinase superfamily protein 24 123 - -
Stsc90635g00007 444 Gene3D Phosphorylase Kinase; domain 1 24 123 - -
Stsc90635g00007 444 FunFam Serine/threonine-protein kinase SRPK 117 413 - -
Stsc90635g00007 444 SUPERFAMILY Protein kinase-like (PK-like) 32 417 IPR011009 -
Stsc90635g00007 444 ProSitePatterns Serine/Threonine protein kinases active-site signature. 165 177 IPR008271 GO:0004672|GO:0006468
Stsc90635g00007 444 PANTHER PROTEIN KINASE DOMAIN-CONTAINING PROTEIN-RELATED 225 424 - -
Stsc90635g00007 444 ProSiteProfiles Protein kinase domain profile. 38 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90635g00007 Stsc-Chr90635 57413 61121 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90635g00007 4 414 EF-hand Containing Proteins AT5G22840 52.155 2.57e-171 489
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_SRPK Stsc90635g00007 Pkinase 8.7e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90635g00007 K08832 - gmx:100784192 724.546