Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90634g00033 ATGACAGATCCTCAATCCAATTATTCCTTAGACGATGATGGATTCTACAACTTCATGCCTCTACTCCACCCTCATCATCATCACCACCACTGTTCTTCATCTTCTTCTTCTTCTCAATCCAATTTGCACCCATCATTTGCATACTTAAACACAAGATTTGTTGGAGCAACAACAACTCATCATCACCAACAACAATCTGAAGCTTCTTCTTCATCTTCCTCCAAATATTATTTTCTTCCTTCAAATTCCCCTCCTCTTAAAGAAGCACTTCCTCTCATAAACAAGCTAAGCCTCACAAATCAGCAACAAAACAAAAACCAACCCTCGAACTCGAACACCGACGGTGCACTAGTTCAAGAGAAAACCGGCAAAGACGAGTTTCTGCAATCGTCTTTGCACCGGTTTCCGGATTCTATTACTAGAAATCCAGGTAATAGTACTAATTATGACAACAATAACGAAGATGAAGACGAAGGCGAAAGTGTGACTGTTGCCCTACGCATAGGGCTTCCAAGAATGGATACTTGTTATGATCTTGAAGGTTCAAGAAAGGACTCAACTAGTTCAATAATGGAAATTATGGCTGCTGAGAAGGATGAAGAAGTGAACAATGATAAAGATAATGTGTTTTCTGGAAACCCTTTTGAGAGATTCAACATTAACAAGAACAATAAGGGTCACTATTGGATTCCCACACCTTCTCAGATTCTAATTGGACCTACACAGTTCTCATGCCATCTTTGCTCCAAATCCTTCAACAGATACAATAATCTTCAGATGCATATGTGGGGGCATGGATCACAATACAGAAAAGGTCCTGATTCTCTAAAAGGAACACAACCAACAGCAATGCTAAGGCTTCCATGCTTTTGTTGTGAACAAGGTTGCAAGCACAACATAGACCACCCTAGGGCAAGGCCCTTGAAGGATTTCAGAACCCTCCAAACACACTACAAGAGAAAGCATGGCATCAAACCCTATTTGTGCCGGAAATGCCGGAAGCCGTTCGCCGTCAAAGGCGACTGGCGGACGCATGAGAAGAACTGCGGCAAGGTTTGGTATTGTTTGTGTGGATCTGATTTCAAGCACAAGAGGTCACTAAAGGATCATATTAGGTCATTTGGAGATGGACATGGAGCCTTTGGGATTCAGAGTTTGCAAGAATTTGAAGATGAAGCTGCTTCAGAAGCTGAACATGATGGGGAAAGTAGTTCATTGTGA 1221 0.4185 MTDPQSNYSLDDDGFYNFMPLLHPHHHHHHCSSSSSSSQSNLHPSFAYLNTRFVGATTTHHHQQQSEASSSSSSKYYFLPSNSPPLKEALPLINKLSLTNQQQNKNQPSNSNTDGALVQEKTGKDEFLQSSLHRFPDSITRNPGNSTNYDNNNEDEDEGESVTVALRIGLPRMDTCYDLEGSRKDSTSSIMEIMAAEKDEEVNNDKDNVFSGNPFERFNINKNNKGHYWIPTPSQILIGPTQFSCHLCSKSFNRYNNLQMHMWGHGSQYRKGPDSLKGTQPTAMLRLPCFCCEQGCKHNIDHPRARPLKDFRTLQTHYKRKHGIKPYLCRKCRKPFAVKGDWRTHEKNCGKVWYCLCGSDFKHKRSLKDHIRSFGDGHGAFGIQSLQEFEDEAASEAEHDGESSSL 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90634g00033 406 PANTHER ZINC FINGER PROTEIN WIP2 55 398 IPR043584 GO:0003700|GO:0010468
Stsc90634g00033 406 MobiDBLite consensus disorder prediction 133 150 - -
Stsc90634g00033 406 Gene3D Classic Zinc Finger 325 374 - -
Stsc90634g00033 406 ProSiteProfiles Zinc finger C2H2 type domain profile. 243 270 IPR013087 -
Stsc90634g00033 406 MobiDBLite consensus disorder prediction 58 80 - -
Stsc90634g00033 406 Gene3D Classic Zinc Finger 242 265 - -
Stsc90634g00033 406 MobiDBLite consensus disorder prediction 132 159 - -
Stsc90634g00033 406 SUPERFAMILY beta-beta-alpha zinc fingers 236 265 IPR036236 -
Stsc90634g00033 406 ProSitePatterns Zinc finger C2H2 type domain signature. 245 265 IPR013087 -
Stsc90634g00033 406 FunFam Zinc finger protein WIP2 296 378 - -
Stsc90634g00033 406 SUPERFAMILY beta-beta-alpha zinc fingers 311 347 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90634g00033 Stsc-Chr90634 285805 288941 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90634g00033 162 398 C2H2 Transcription Factor Family AT3G57670 64.173 1.44e-110 328
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc90634g00033 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90634g00033 - - gmx:100794446 433.721