Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90634g00028 ATGGCCACCACCGCCAACAGCAACAGAGCTTGCAAGTTCTATGCCCGTGGAACATGTTTGAAAGGGGAGCAGTGTTGCTTCTCCCATGAGAGAAATGACCCTTCTTTAGATGTTTGCCTGTTCTATCAGAAGGGCTACTGCGCTTATGGCAGTCGATGCAGGAATAGGCATGTCAAACCATCACAGCCATTGGCATCAGCTTCAGCAAATGGGCCCCTATCTGTGGTTTCACAATCTGCCACGACTCCTAGTGTTGCTAAGGGAAAATTTACTTGGGTTCGGAAGCCGGATACAAAGGTGTTGTCTCCAATTGAAAAACATGCTAATACCTTACAACACAAGGATCAGCATTCTAAAGGGACTCATTGTGAAGTTGGTGAATCGAGTGGTGCTGCTATGCTGGATGAGAACTTGTTCTGTGAATTTGATGCTGCCAACTGCACCTCAGGGCATAAGTGTACCAAAATTCATGGAATCCGCTGCTTGTACTGCAGAAAGCCTTGTTTGCATCCGACCGATCTGAAGCAAAGGTGGCAACACTTGAAGATTTGCAAGGAAAAGGCTGAGATTATGAAGAATAGTCAATATATAGAATGCAGTATTTGCCTGGAGCACGTTCTGGGGAAGCCTAGACCATCTCTGCGCAAGTTCGGGTTGCTACCTGAATGTGACCATGCTTTCTGTTTACACTGCATCATCAGTTGGCGCAAGAAGGCTCCATCCAATGCAATGGACTGCCCTGTGTGCCGCAAGCATTCACCTTTTTATGTTCAAAGTGAAATTTGGTATTCTACAAAGGAAGAAAAACAGGCAATTATTGACAATTTCAAGGCGAACTGCAGGCTGATTGATTGCAAGTACTTTAAATTTGGAAGTGGGAGGTGCCCTCATGGAACTAGTTGTATTTACAAGCATACTGTGAAACCTGCCAAGTCTAAACGAAACAGGAACAGAAACAGGAAGCATAAGGGGCCACCATCTTCAATCGTAGGAGACCATCTCGACAAATACGACATCTTGGCAGAGCTAAGTGAATTTGATTTGCATCCTTTTGAGTTTTATTCCATCTTGAAGGACATGGAATGGTTCGATGATATGGGCATGTTCGAGAAGATGGCTTTAGCTGATAAGCTGGCTGGTCCTTGTTACAAAGATTCATGTTTCTTTCCCCGGGGTGACAGTGACGATGATTTTGGTGAAGAATTTGATGATGATGATGAATTTTTATCAATGATGGCTTTTGGTATGCCACCATTTGGATTCTGGGATGATGAATTCGAATACAGCGATGATGAAAACAGCGATGATGATGATGATGATGAAGACAGTGATGATGATGATGAAGACAGTGATGAGGACTAA 1362 0.4391 MATTANSNRACKFYARGTCLKGEQCCFSHERNDPSLDVCLFYQKGYCAYGSRCRNRHVKPSQPLASASANGPLSVVSQSATTPSVAKGKFTWVRKPDTKVLSPIEKHANTLQHKDQHSKGTHCEVGESSGAAMLDENLFCEFDAANCTSGHKCTKIHGIRCLYCRKPCLHPTDLKQRWQHLKICKEKAEIMKNSQYIECSICLEHVLGKPRPSLRKFGLLPECDHAFCLHCIISWRKKAPSNAMDCPVCRKHSPFYVQSEIWYSTKEEKQAIIDNFKANCRLIDCKYFKFGSGRCPHGTSCIYKHTVKPAKSKRNRNRNRKHKGPPSSIVGDHLDKYDILAELSEFDLHPFEFYSILKDMEWFDDMGMFEKMALADKLAGPCYKDSCFFPRGDSDDDFGEEFDDDDEFLSMMAFGMPPFGFWDDEFEYSDDENSDDDDDDEDSDDDDEDSDED 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90634g00028 453 Pfam Ring finger domain 198 250 IPR001841 -
Stsc90634g00028 453 MobiDBLite consensus disorder prediction 421 453 - -
Stsc90634g00028 453 MobiDBLite consensus disorder prediction 424 453 - -
Stsc90634g00028 453 SUPERFAMILY CCCH zinc finger 8 30 IPR036855 GO:0046872
Stsc90634g00028 453 ProSiteProfiles Zinc finger RING-type profile. 199 250 IPR001841 -
Stsc90634g00028 453 ProSiteProfiles Zinc finger C3H1-type profile. 33 60 IPR000571 GO:0046872
Stsc90634g00028 453 PANTHER MAKORIN-RELATED 10 321 IPR045072 GO:0000209|GO:0061630
Stsc90634g00028 453 ProSitePatterns Zinc finger RING-type signature. 223 232 IPR017907 -
Stsc90634g00028 453 ProSiteProfiles Zinc finger C3H1-type profile. 5 32 IPR000571 GO:0046872
Stsc90634g00028 453 ProSiteProfiles Zinc finger C3H1-type profile. 279 308 IPR000571 GO:0046872
Stsc90634g00028 453 Gene3D - 2 71 - -
Stsc90634g00028 453 SMART c3hfinal6 279 307 IPR000571 GO:0046872
Stsc90634g00028 453 SMART c3hfinal6 7 31 IPR000571 GO:0046872
Stsc90634g00028 453 SMART c3hfinal6 33 59 IPR000571 GO:0046872
Stsc90634g00028 453 SUPERFAMILY RING/U-box 192 256 - -
Stsc90634g00028 453 MobiDBLite consensus disorder prediction 310 329 - -
Stsc90634g00028 453 SMART ring_2 199 249 IPR001841 -
Stsc90634g00028 453 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 179 280 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90634g00028 Stsc-Chr90634 238256 242334 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Stsc90634g00028 zf-RING_2 2.1e-07 CL0229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90634g00028 K15687 - gmx:100819577 379.407