LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc90634g00016	ATGGCTCAGAAAACAGAGAAAGAAGAAACTGAGTTCAAGGTTCCAGAAACCATTACCCCTTGCGTCAATAATTGTGGCTTAACAGGTAATCCAGCCACGAACAACATGTGCCAGAACTGCTTCAAAGCCACCACCGTCACCGCCACTGCCGCCGCGGCGTCCGCAACTACAACAGCAACAACAACAACGGCGATCTCGCAGCAGAATTCTAGATTCTCCGATGAGAAAGCCACCGCAACGCCCAGATCTGCCACGTCAACGCGCTCGCCGAAGAGATCTCACCCGTCGAACGAAGAGGAGAATCCGCGAGAGGCTAATTCCGGAACAGGCCGTGGCGAGACGACGTCGTCGGAGGCAAAGCGCGTGGTGAATCGGTGCTCAGGTTGCCGTAGGAGAGTCGGTCTCACCGGATTCCGTTGCCGGTGCGGCGAGCTCTTCTGCGCGGAGCACCGGTACTCCGATCGCCACGAGTGCAGCTACGATTACAAGGCAGCAGGAAGGGAAGCCATCGCGAGAGAGAATCCGGTGGTTAAAGCCGCGAAGATCGTTAAGGTCTGA	558	0.5645	MAQKTEKEETEFKVPETITPCVNNCGLTGNPATNNMCQNCFKATTVTATAAAASATTTATTTTAISQQNSRFSDEKATATPRSATSTRSPKRSHPSNEEENPREANSGTGRGETTSSEAKRVVNRCSGCRRRVGLTGFRCRCGELFCAEHRYSDRHECSYDYKAAGREAIARENPVVKAAKIVKV	185

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc90634g00016	185	MobiDBLite	consensus disorder prediction	55	117	-	-
	Stsc90634g00016	185	SUPERFAMILY	AN1-like Zinc finger	113	179	IPR035896	-
	Stsc90634g00016	185	ProSiteProfiles	Zinc finger A20-type profile.	15	49	IPR002653	GO:0003677\|GO:0008270
	Stsc90634g00016	185	FunFam	Zinc finger A20 and AN1 domain-containing stress-associated protein 1	1	69	-	-
	Stsc90634g00016	185	Gene3D	-	110	171	IPR035896	-
	Stsc90634g00016	185	PANTHER	AN1-TYPE ZINC FINGER PROTEIN	19	184	-	-
	Stsc90634g00016	185	SMART	A20_3	18	42	IPR002653	GO:0003677\|GO:0008270
	Stsc90634g00016	185	MobiDBLite	consensus disorder prediction	55	91	-	-
	Stsc90634g00016	185	SMART	AN1_Zf_4	126	163	IPR000058	GO:0008270
	Stsc90634g00016	185	SUPERFAMILY	Glucocorticoid receptor-like (DNA-binding domain)	21	59	-	-
	Stsc90634g00016	185	ProSiteProfiles	Zinc finger AN1-type profile.	120	166	IPR000058	GO:0008270
	Stsc90634g00016	185	Pfam	A20-like zinc finger	20	42	IPR002653	GO:0003677\|GO:0008270
	Stsc90634g00016	185	FunFam	Zinc finger AN1-type containing 6	53	181	-	-
	Stsc90634g00016	185	Gene3D	-	1	98	-	-
	Stsc90634g00016	185	MobiDBLite	consensus disorder prediction	92	106	-	-
	Stsc90634g00016	185	Pfam	AN1-like Zinc finger	126	163	IPR000058	GO:0008270

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc90634g00016	Stsc-Chr90634	155651	156208	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc90634g00016	8	185	C2H2 Transcription Factor Family	AT3G52800	38.202	1.13e-34	118

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc90634g00016	-		-	adu:107463072	318.931