Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90634g00011 ATGGACAAGGGACCACCACCTGCCCTCTTTGTTAATGATGGTTCATTCATGGAGAAATTCAAGCAAATGCAGCAAGAGCAGGAGAAGGAGAAGAATAACAAACTATCTGAGCCTAAACCAATTAAAGTTGTTTCAGGATCGTTGGCTCCTAAACCCTCCATTAGTAGGGTTAATGATACACGTAAAACTTCTCAGGCAAGTTCCAGTGGCAAACTTGCTTTCAGTCTAAAACAAAAGTCAAAGCTGGTTCCGCCGCCTGTTAAGTTAGCTGATGATGATGAAGAAGAAGAAGAAACAGATGCTGGGGATTTTTCTAATTCTGTACAGGCAAAACGGCAAAAATTTGATCAGGAGGATGGCACTACACAGCCATCGAGACAATTTGATGTTGCACCTCCAACCCCAATTGATCCAATGGTGAAGAAAGTTGCTGACAAATTAGCAAGTTTTGTGGCTAAAAACGGAAGACAATTCGAGGATGTTACACGCCAAAAGAATCCTGGGGATACACCTTTCAAATTTTTATTTGATCCAAGATGTTCTGACTATAAATATTATGAATATCAACTTGCTCAAGAGGAAAAGGCCCTTGCACAGTCCAAAGAACCACAGGCAAATCGTAATGTTTTATCCTCAGGGGGTACAGGCGTTTCGTCGTCTAGACCAACAAATGGTTCTCAGAGATCATCTCAGCAGCATTCAACCTACCAAATCCCTGCTTCTGCTTTATATGAAAGTTCTGAAATATCAAGGGCTTCTGGATCTTTGGTTCAGGCATATTCAGCAGGAAGCACTGACGAGCCTAGTGGATCATCAAATGCCGATTCTTTAGCACTAATGGAGTTCTACATGAAGAAAGCTGCACAGGAAGAGAAGTTCAGACAGCCTAAGCACTCAAAGGATGAGATGCCCCCTCCTGCTTCTCTTCAAGCTTCTAGTAAAAAAGGCCATCACATGGGTGATTACATTCCCCAGGAAGAGCTTGAGAAGTTCTTGGCTAGCTGTAATGATGCAGTCGCACAGAAAGCTGCGAAGGAGGCTGCAGAGAAGGCAAAAATCCAGGCTGATAATGTGGGCCACAAGCTTTTATCAAAAATGGGTTGGAAAGAAGGTGAGGGTTTAGGTGGTTCCAGGAAGGGTATTGCAGATCCTATAATGGCAGGCAATGTTAAGAAAGATAACTTGGGAGTAGGTGCTGTCCAACCTGGGGAGGTGACTCCAGATGATGACATATACGAGCAGTACAAAAAGCGGATGATGCTTGGCTACCGGCACAGACCCAATCCTCTGAACAATCCTCGTAAGGCTTATTATTGA 1317 0.4358 MDKGPPPALFVNDGSFMEKFKQMQQEQEKEKNNKLSEPKPIKVVSGSLAPKPSISRVNDTRKTSQASSSGKLAFSLKQKSKLVPPPVKLADDDEEEEETDAGDFSNSVQAKRQKFDQEDGTTQPSRQFDVAPPTPIDPMVKKVADKLASFVAKNGRQFEDVTRQKNPGDTPFKFLFDPRCSDYKYYEYQLAQEEKALAQSKEPQANRNVLSSGGTGVSSSRPTNGSQRSSQQHSTYQIPASALYESSEISRASGSLVQAYSAGSTDEPSGSSNADSLALMEFYMKKAAQEEKFRQPKHSKDEMPPPASLQASSKKGHHMGDYIPQEELEKFLASCNDAVAQKAAKEAAEKAKIQADNVGHKLLSKMGWKEGEGLGGSRKGIADPIMAGNVKKDNLGVGAVQPGEVTPDDDIYEQYKKRMMLGYRHRPNPLNNPRKAYY 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90634g00011 438 SMART surpneu2 141 195 IPR000061 GO:0003723|GO:0006396
Stsc90634g00011 438 Coils Coil 17 37 - -
Stsc90634g00011 438 ProSiteProfiles SURP motif repeat profile. 143 186 IPR000061 GO:0003723|GO:0006396
Stsc90634g00011 438 MobiDBLite consensus disorder prediction 154 176 - -
Stsc90634g00011 438 Pfam G-patch domain 356 399 IPR000467 GO:0003676
Stsc90634g00011 438 SMART G-patch_5 353 400 IPR000467 GO:0003676
Stsc90634g00011 438 MobiDBLite consensus disorder prediction 290 319 - -
Stsc90634g00011 438 MobiDBLite consensus disorder prediction 51 75 - -
Stsc90634g00011 438 MobiDBLite consensus disorder prediction 199 241 - -
Stsc90634g00011 438 MobiDBLite consensus disorder prediction 197 241 - -
Stsc90634g00011 438 SUPERFAMILY Surp module (SWAP domain) 120 195 IPR035967 GO:0003723|GO:0006396
Stsc90634g00011 438 PANTHER ARGININE/SERINE RICH SPLICING FACTOR SF4/14 62 438 IPR040169 -
Stsc90634g00011 438 Gene3D Surp module 126 200 IPR035967 GO:0003723|GO:0006396
Stsc90634g00011 438 ProSiteProfiles G-patch domain profile. 355 402 IPR000467 GO:0003676
Stsc90634g00011 438 MobiDBLite consensus disorder prediction 21 137 - -
Stsc90634g00011 438 Pfam Surp module 142 191 IPR000061 GO:0003723|GO:0006396
Stsc90634g00011 438 MobiDBLite consensus disorder prediction 22 37 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90634g00011 Stsc-Chr90634 90827 96587 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90634g00011 329 398 C2H2 Transcription Factor Family AT5G26610 40.541 5.59e-08 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90634g00011 K13096 - gmx:100786213 637.106