Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90634g00010 ATGAGTGTTGTGTATAGTAATGCTCTAAAATACTCTCAAGAAATGGATTCAAACAACACAAATTCAGGATTATTAAGGTACCGTTCTGCTCCAAGCTCAATGCTCACAAGCCTTATGGATAACATCCACCACCACGGTGGCGGCCGCAGCGGCGATGAAGAAGCCTTCAGAACTGAATTGGAAAAATTGATCTCTTCATCCAACAACAATAACAACAAAAATGTTGTGAGCAATAATAATTCTTATTCAGAGCATTTGAAGAGAGAAGAAGACAACAACAACTACTCTTTTGGGTCTCATAATCATGCTATTTACCAAAATAACCAACACTACCATCACAGCATTCATCAAGGTTTTGATGGAACATTTAGTGCAATGAACTCATCAATGGATTCAGAGAATAATAATAATAATAATGGCACACAAAGTAATAAAATGGGTTCCAATCTCATAAGGCAAAAGAGTTCCCCAGCTGGATTTTTCTCCAATTATTCACAACTTGATAATAATGGTACAACAACATCAAGCAGTGGTGGATTGCAATGCACTTTGAACTTCTCATCATCAAGATTATTATCCTCAAGCTCCAATAAAAGGCGCATGCCAAAAATTGTTGAGAGTGGAAATGAAGGCATGGAATCAACAAATTGTGTTCATAGTAATAATAATAATAATAATATGCCAAGATTCACTACTACTGACTTTTGGGATGTTTCTGCATTCAATAATTCCTCCAAAACAAGCACTGCCAATAATGGTGCTGAAATCATGTTTTCCACTTCAAATAATGCTATGGAAGCTCAGGATGTAGATTTTGGATATCAGAAGCTTGGTTTGAGTCACCATTTGAGTCTACCTAGTTCTTCTACCAAGATTGGTGGCATGGAAAAACTTTTTCAAATTCAAGGATCATCTGCTCCATGTAAGATTAGAGCCAAAAGAGGATTTGCCACTCATCCAAGAAGCATTGCAGAGAGGGAAAGAAGAACAAGAATAAGTGCAAGAATCAAGAAACTACAAGACCTTTTCCCAAAATCAGACAAGCCAACAAGCACTGCAGATATGTTGGATTTGGCTGTTGATTATATCAAAGGCCTCCAGAAACAAGTCAAGATACTCACAGATACAAGGGCAAAGTGCAGATGTTCAAGTAGTAATCAGAAAGAACAATAA 1173 0.37 MSVVYSNALKYSQEMDSNNTNSGLLRYRSAPSSMLTSLMDNIHHHGGGRSGDEEAFRTELEKLISSSNNNNNKNVVSNNNSYSEHLKREEDNNNYSFGSHNHAIYQNNQHYHHSIHQGFDGTFSAMNSSMDSENNNNNNGTQSNKMGSNLIRQKSSPAGFFSNYSQLDNNGTTTSSSGGLQCTLNFSSSRLLSSSSNKRRMPKIVESGNEGMESTNCVHSNNNNNNMPRFTTTDFWDVSAFNNSSKTSTANNGAEIMFSTSNNAMEAQDVDFGYQKLGLSHHLSLPSSSTKIGGMEKLFQIQGSSAPCKIRAKRGFATHPRSIAERERRTRISARIKKLQDLFPKSDKPTSTADMLDLAVDYIKGLQKQVKILTDTRAKCRCSSSNQKEQ 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90634g00010 390 SMART finulus 322 372 IPR011598 GO:0046983
Stsc90634g00010 390 Gene3D - 318 389 IPR036638 GO:0046983
Stsc90634g00010 390 Pfam Helix-loop-helix DNA-binding domain 322 367 IPR011598 GO:0046983
Stsc90634g00010 390 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 28 387 - -
Stsc90634g00010 390 FunFam Transcription factor bHLH130 family 317 386 - -
Stsc90634g00010 390 MobiDBLite consensus disorder prediction 125 149 - -
Stsc90634g00010 390 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 316 366 IPR011598 GO:0046983
Stsc90634g00010 390 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 319 381 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90634g00010 Stsc-Chr90634 72213 75987 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90634g00010 16 372 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G42280 37.368 5.36e-45 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc90634g00010 HLH 1.6e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90634g00010 - - gmx:100795896 341.273