Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90633g00038 ATGATCTCGCTCACCACATTTGTGTTGGAACTTATTAATTATACGCCAAATCTCAAACTCTGCGACTCTCACCGTGGCGGCGTGGCGTCACTCCTTCAACAATCAAACCCTAAACCTCCGCCACCGCTGCCGTCCAGCAATCTTCAGCTCATCCCAGCCAACGAGCACCATTCTCTCATCCTCTGCCTCACTTCAATTTCTCTTCCTCTCCTTCAAGCCATTCCATTCTCCCAAGCTCCCCCTCTGCCTCGCCTCTCCGTCGCCTTCACATCGTCCACTCCTTCATCGTCTTCGCCACCTTCGAGCTGTGCCTTCCTGCAGCAGCCGAACCTTGCCCTTAACTCATCAGAGTCAGAGACGAAGATGGTGAGCCAGAGGCAGCGACTTGCAAAGAAGCGATTCAAAGAGGCGAACCCCGAGCTCTTTCCCAAGCCCGATCCCACGCCTCCCAAGGACCCTGACAAGAAGAAGAAAAAGAAGAAATTTAAGAGCAAATCTATTAAGCGCAAAAGTGATGGCTCCGAACAACTCAGCGTCTCTAAGAAGCCTTTCAAGAGCAGTTACCGAAAACACCCTCTCAGAGTACCTGGCATGAAGCCCGGTGACACCTGCTTCATCTGCAAGGCCGCCGACCATATTGCCAAGTCTTGTCCTCAAAAGGCCGAATGGGAGAAAAATAAGATATGCTTGCGGTGTCGACGGCGTGGTCATCGAGCTAAGAATTGCCCTGAAGTTCAAGATGGTGCCAAGGATGACAAGTATTGTTACAATTGTGGAGAAACTGGCCATTCACTTGCAAATTGTCCCCACCCTCTTCAAGAAGGAGGGACAAAGTTTGCAGAGTGCTTTGTCTGTAAACAACAAGGACACTTGAGTAAAAATTGTCCTCAAAATGCTCATGGCATCTATCCTAAGGGTGGTTGTTGTAAAATATGTGGTGGCGTGACACATTTGGCAAGGGATTGTCCCGACAAAGGGAAGAAAGCACCTTTTGCTGCTAATGGGCCTGCTGATGGATCAATGAGGCTGAGAAGGGAACAGAGGCCTTGTGGAACGGTAACTAAATTTACAAGCGGGGATGACATTGAGGATGACTTCATGACAGATGACATGAATAGTGGAGACAAGGACAAGTCCTCAAAGTCCAAAGATGGTCAAGTAAAACCAAAGAAGGGTCCTAAAGTTGTGAACTTTTAG 1197 0.4879 MISLTTFVLELINYTPNLKLCDSHRGGVASLLQQSNPKPPPPLPSSNLQLIPANEHHSLILCLTSISLPLLQAIPFSQAPPLPRLSVAFTSSTPSSSSPPSSCAFLQQPNLALNSSESETKMVSQRQRLAKKRFKEANPELFPKPDPTPPKDPDKKKKKKKFKSKSIKRKSDGSEQLSVSKKPFKSSYRKHPLRVPGMKPGDTCFICKAADHIAKSCPQKAEWEKNKICLRCRRRGHRAKNCPEVQDGAKDDKYCYNCGETGHSLANCPHPLQEGGTKFAECFVCKQQGHLSKNCPQNAHGIYPKGGCCKICGGVTHLARDCPDKGKKAPFAANGPADGSMRLRREQRPCGTVTKFTSGDDIEDDFMTDDMNSGDKDKSSKSKDGQVKPKKGPKVVNF 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90633g00038 398 SUPERFAMILY Retrovirus zinc finger-like domains 197 245 IPR036875 GO:0003676|GO:0008270
Stsc90633g00038 398 MobiDBLite consensus disorder prediction 133 193 - -
Stsc90633g00038 398 FunFam Zinc finger CCHC-type-containing 9 279 330 - -
Stsc90633g00038 398 ProSiteProfiles Zinc finger CCHC-type profile. 255 269 IPR001878 GO:0003676|GO:0008270
Stsc90633g00038 398 Gene3D - 196 251 - -
Stsc90633g00038 398 MobiDBLite consensus disorder prediction 331 398 - -
Stsc90633g00038 398 Gene3D - 252 302 - -
Stsc90633g00038 398 ProSiteProfiles Zinc finger CCHC-type profile. 282 297 IPR001878 GO:0003676|GO:0008270
Stsc90633g00038 398 SUPERFAMILY Retrovirus zinc finger-like domains 248 299 IPR036875 GO:0003676|GO:0008270
Stsc90633g00038 398 MobiDBLite consensus disorder prediction 369 390 - -
Stsc90633g00038 398 Pfam Zinc knuckle 282 297 IPR001878 GO:0003676|GO:0008270
Stsc90633g00038 398 Pfam Zinc knuckle 254 270 IPR001878 GO:0003676|GO:0008270
Stsc90633g00038 398 ProSiteProfiles Zinc finger CCHC-type profile. 229 244 IPR001878 GO:0003676|GO:0008270
Stsc90633g00038 398 SMART c2hcfinal6 308 324 IPR001878 GO:0003676|GO:0008270
Stsc90633g00038 398 SMART c2hcfinal6 254 270 IPR001878 GO:0003676|GO:0008270
Stsc90633g00038 398 SMART c2hcfinal6 203 219 IPR001878 GO:0003676|GO:0008270
Stsc90633g00038 398 SMART c2hcfinal6 228 244 IPR001878 GO:0003676|GO:0008270
Stsc90633g00038 398 SMART c2hcfinal6 281 297 IPR001878 GO:0003676|GO:0008270
Stsc90633g00038 398 PANTHER OS04G0555800 PROTEIN 122 398 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90633g00038 Stsc-Chr90633 256055 260838 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90633g00038 229 325 C2H2 Transcription Factor Family AT5G20220 28.070 9.06e-07 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90633g00038 - K17578 ahf:112779196 461.07