Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90633g00031 ATGGGGTTGCAGCCACTGGAAAAAGCAAAACCAAAATACAAGAAGGGTTTATGGTCACCTGAAGAGGACAATAAGCTCAAAAACCACATTGTAAAGCATGGTCATGGCTGCTGGAGTTCTGTTCCTATTAAGGCAGGTTTACAAAGGAATGGAAAAAGTTGCAGACTGAGGTGGATTAACTATCTAAGACCAGGATTAAAGAGGGGTCTATTCTGTAAACAAGAGGAGGAGACAATCCTCTCCCTTCACCAGATGCTGGGCAACAAGTGGTCTCAGATAGCACATCATTTACCAGGAAGAACTGACAATGAGATAAAGAACTATTGGCACTCATATTTGAAAAAGAAAGTGACTAAGGAAATGGAATCTCATGAACAAGTTCACCATGCTACCTCATCAAGCTCAGAAACCATGGATTCTTCTTCACACACTGTCCAGAATCTTGCAACACAAGGCACACACAATAATTATAATTTCACCAATGAGGTGGCTTGTCAAAGTTCCTCCTTACCAAAACTTCTTTTTGCTGAGTGGCTTACACTGGATCATGAGCAATGTGGTGGCAACTCTGCTAATTCATACGATGAATCTTTGGCTTTGAAGAATGGATTTGACAATCAAATTTCTTCTTTTCAAGAATCTGCTACAGTACATGATACTTTGTCACAAGGACTCTTTGGAGGAGATTATCATAATGATAGTCTAATTCATAATTCAGCCTCAGAGATGTACAATAATTCACGGCTTAAGTTTGGAACAACAATGGAGGAAAGTGGATTTATCCATTGTATGGCTGGGGTTGATTTTAGTGGCAATTTCAACATGAGCAATGATACCATGTATATATGA 849 0.3934 MGLQPLEKAKPKYKKGLWSPEEDNKLKNHIVKHGHGCWSSVPIKAGLQRNGKSCRLRWINYLRPGLKRGLFCKQEEETILSLHQMLGNKWSQIAHHLPGRTDNEIKNYWHSYLKKKVTKEMESHEQVHHATSSSSETMDSSSHTVQNLATQGTHNNYNFTNEVACQSSSLPKLLFAEWLTLDHEQCGGNSANSYDESLALKNGFDNQISSFQESATVHDTLSQGLFGGDYHNDSLIHNSASEMYNNSRLKFGTTMEESGFIHCMAGVDFSGNFNMSNDTMYI 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90633g00031 282 Gene3D - 15 67 - -
Stsc90633g00031 282 CDD SANT 18 62 IPR001005 -
Stsc90633g00031 282 SMART sant 67 115 IPR001005 -
Stsc90633g00031 282 SMART sant 14 64 IPR001005 -
Stsc90633g00031 282 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Stsc90633g00031 282 SUPERFAMILY Homeodomain-like 12 109 IPR009057 -
Stsc90633g00031 282 PANTHER MYB DOMAIN PROTEIN 55 7 228 - -
Stsc90633g00031 282 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Stsc90633g00031 282 Pfam Myb-like DNA-binding domain 71 113 IPR001005 -
Stsc90633g00031 282 MobiDBLite consensus disorder prediction 130 145 - -
Stsc90633g00031 282 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Stsc90633g00031 282 FunFam MYB transcription factor 70 141 - -
Stsc90633g00031 282 Gene3D - 71 144 - -
Stsc90633g00031 282 CDD SANT 73 113 IPR001005 -
Stsc90633g00031 282 FunFam MYB transcription factor 12 68 - -
Stsc90633g00031 282 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 62 IPR017930 -
Stsc90633g00031 282 MobiDBLite consensus disorder prediction 122 145 - -
Stsc90633g00031 282 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90633g00031 Stsc-Chr90633 226097 227586 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90633g00031 8 200 MYB Transcription Factor Family AT3G48920 54.315 1.71e-64 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc90633g00031 Myb_DNA-binding 5.6e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90633g00031 K09422 - gmx:778167 370.933