Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90633g00029 ATGGCAAATAAGTTCAGCAACAACTTGAATGACATTAATGAAAGATCGGAGAAGGAATCATGCATTCAGAAATCGGAGAAACAGATTGTTCAGCCTTTGGACAAAGTTGGCAACTCAAGGGCTCAATTTGAAGACCTCCCAGAAGAAGATCCGCAGGAGGAATTGTGTGAGGAGCTAGAGGAAGATCCAGAGGAGGAATTAGCCGAGGAACTGGAGGAAGATCCAGATGAAGAATCAGCTGAGGAAGATCCAGAGGAGGAATCAGCTGAGAAACTGGAGGATGATCTAGAGGAAGAACCAACTGAGGAACTAGAGGAGGAAGATCCAGAGGAAGAACCAACTGAGGAAGAAGATCCCAAGGAAGAACCAACTGAGGAGCTAGAGGAAGATCCAGAGGAAGAACCAACTGAGGAGCTAGAGGAAGATCCCAAGGAAGAACCAACTGAGGAGCTAGAGGAAGATCCTGAAGAGGATCCAGTAGTAAACATCAAGTGGGAGGGTGCATCATGTAATGAAGTTCTATCATTATCTAAGGCATCGTATCAATCACAGGAAAAATGCAAGCAGGACGGGATGCAAAGCCAAAATTTAGAACCAGAAGCTTCACAATTTGAACCCAGTAATGACGAGTCTATTTCTGTAGCACCTAGTGATAAAGTTGGTTCCAAAGAAGAAGTTTCAGGAAGGTCTGCTAAACAAAGGCGCAGTAGATGGGAACCACAACCTTGTGGAGATGGGACGAATGATGATCAAACTTGCAAAAGGAGGAAAACCAGGTGGTCTAGTGAAGAAACTCAAATGAAAATGCTGGGTCCACTTCAGCTACCTAACTTAACCGTGAATTTTGCTACTACATCTGATAAGAATCCACAAATTCAGGGACTGAAAGTTGAGCTCTTGGAGACTACCAAAAAGAGCAAGCCCCCAAAGCTCTTCAAAAAGCTTTACGTACCAGTGAAAGAATATCCAGAGTACAATTTCATTGGACTTATTATTGGTCCTCGTGGAAACACAATGAAGAAGATGGAAAAAGAATCTGGGGCTACGATCCTTCTAAGAGGTAAAGGCTCCACAAAAGCAAGTAGCAAATGTGACTCTGAGAAAGAAGATTTACATGTTTTAATAGAAGCTGACAACCAAAAATCACTGGATGCAGCAGTTGGCATGGTTGAAAAACTGCTAGTTCCAGTTGAAGAAGGACGAAATGAGCACAAGCGTGAACAGTTAAAGGAGCTGGCTCAACTGAAAGCAACACGGAGAGATGCAAATGTGTGCAGTGTGTGTGGTGATAAGGGACACAGACATTATGCATGTCCTAACCTTGAATCAACTTTTAAATTCGAATTATTTGACACTGGTTTTAGCAGCAGCCTTTCAACTGGATCGAGTCTTAATTCATCAATGCAGAATGGACAAACAAGGCGAGGAAGGGAAATAAACGACAAAGTCCTCTATGTTGGGTATCTGCCTCAGTCAATTGACGATAATAGATTGACTGAGCTGTTCTCCCCATTTGGTAAGATCACTGAAGCAAATATTGTTAAGGATCGAACAACTGGCATTAGTAAAGGTTATGGCTTTGTCAAATTTGAAGATTCCCAAGATGCAGCTTTAGCTATAACACATCTAAATGGTTTTAAAATTGAAGGAAAGTTTTTGAAAGTGAAGATAGCCGGAGTGCAGGCAAATTATGGAACCCCAAGGCTAAACCCCATTCCCCAGATCCCAGTGCCTGCAACTGCATCCACAAATGTCACACGCCAAACAAATCATTCTGATCCATTACATTTCATGCTGCCAGAATACCAGTCTTCATTTCATGACAGCAGTAGCTCAAATATGTTTCCATGTAATATCAACTCAGTCTCAGAGCATGGTGATCCTATGAAGGCAAATGTTTTGCCCTTTACTCCTCCAGGAAACACTTTGATCTCTCCCCATCTCAGTTATTCTGGCAGCTTTTCAGATCAAAGTTTGTTCTCATCAAAAAATTCGACAGCACATTTTCCTGGTGATCATGGTAATTTCAGTCCTTTCTTATGA 2043 0.4209 MANKFSNNLNDINERSEKESCIQKSEKQIVQPLDKVGNSRAQFEDLPEEDPQEELCEELEEDPEEELAEELEEDPDEESAEEDPEEESAEKLEDDLEEEPTEELEEEDPEEEPTEEEDPKEEPTEELEEDPEEEPTEELEEDPKEEPTEELEEDPEEDPVVNIKWEGASCNEVLSLSKASYQSQEKCKQDGMQSQNLEPEASQFEPSNDESISVAPSDKVGSKEEVSGRSAKQRRSRWEPQPCGDGTNDDQTCKRRKTRWSSEETQMKMLGPLQLPNLTVNFATTSDKNPQIQGLKVELLETTKKSKPPKLFKKLYVPVKEYPEYNFIGLIIGPRGNTMKKMEKESGATILLRGKGSTKASSKCDSEKEDLHVLIEADNQKSLDAAVGMVEKLLVPVEEGRNEHKREQLKELAQLKATRRDANVCSVCGDKGHRHYACPNLESTFKFELFDTGFSSSLSTGSSLNSSMQNGQTRRGREINDKVLYVGYLPQSIDDNRLTELFSPFGKITEANIVKDRTTGISKGYGFVKFEDSQDAALAITHLNGFKIEGKFLKVKIAGVQANYGTPRLNPIPQIPVPATASTNVTRQTNHSDPLHFMLPEYQSSFHDSSSSNMFPCNINSVSEHGDPMKANVLPFTPPGNTLISPHLSYSGSFSDQSLFSSKNSTAHFPGDHGNFSPFL 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90633g00029 680 SMART rrm1_1 483 556 IPR000504 GO:0003723
Stsc90633g00029 680 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 482 560 IPR000504 GO:0003723
Stsc90633g00029 680 PANTHER RNA-BINDING PROTEIN RELATED 195 584 IPR045071 -
Stsc90633g00029 680 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 484 554 IPR000504 GO:0003723
Stsc90633g00029 680 FunFam Sex lethal, isoform D 460 560 - -
Stsc90633g00029 680 ProSiteProfiles Type-1 KH domain profile. 326 390 - -
Stsc90633g00029 680 Gene3D K Homology domain, type 1 223 428 IPR036612 GO:0003723
Stsc90633g00029 680 MobiDBLite consensus disorder prediction 222 239 - -
Stsc90633g00029 680 Pfam KH domain 326 390 IPR004088 GO:0003723
Stsc90633g00029 680 MobiDBLite consensus disorder prediction 47 159 - -
Stsc90633g00029 680 SUPERFAMILY RNA-binding domain, RBD 475 558 IPR035979 GO:0003676
Stsc90633g00029 680 MobiDBLite consensus disorder prediction 1 164 - -
Stsc90633g00029 680 Gene3D - 453 564 IPR012677 -
Stsc90633g00029 680 CDD KH-I_BBP 310 395 - -
Stsc90633g00029 680 SMART kh_6 311 395 IPR004087 GO:0003676
Stsc90633g00029 680 MobiDBLite consensus disorder prediction 179 215 - -
Stsc90633g00029 680 MobiDBLite consensus disorder prediction 179 262 - -
Stsc90633g00029 680 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 311 426 IPR036612 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90633g00029 Stsc-Chr90633 210143 212994 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90633g00029 412 568 Eukaryotic Initiation Factors Gene Family AT3G11400 32.759 3.73e-14 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90633g00029 K13095 - qsa:O6P43_008235 414.846