Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90633g00025 ATGGAAGCGCACTCAGAGAACGCCATTTCCATTTCAGTTTACAGAATTACAGAACGCACAATGCATCAGCATGCCAATGCCACACAGGCACAGTCCCCGGTACAACCAGTGCAACCACTTTCCTCCAACGAACACACATGGGACCCTTCAGTCGCCTTCGTCATAGGCTCCATCCTCGGAAGCTTCTTCTTCGTCGCGGCCTTCTTAACCTTCCTCCGCCGCTGTGCAGAGCTACTCCTTGCTCAACAACAGAGCAATAATACCACACAGTTGCCATGTTCCTGCTGCAACACTGGCATCAACCCCGACATCCTCGAAACCTTCCCCATCGTCTTCTATTCCAGCATCAAGGACCTCAGAATCCGCGCAGAGGGTCCCCTAGAGTGCGCCGTCTGCCTCACAGAGTTCACCGGCAACGACACACTTCGTTTGCTGCCACATTGCAACCACGTCTTCCACCCTCCCTGCATTGACGCCTGGCTGTCCTCCCACGTCACGTGCCCCGTTTGCCGCGCCAATCTCAACCAAGATCCCTCCCAAGTCGCGGTTTCGGTGACAACACAATTGAGCAGCGGTGGAGAAGAACATGAAGAAGAGGGTTCTGGAAACAGAGCAGAAGAAGAGAACGTGGGTGGTGAGAGCATAATAATTGAGGGGCAGTGGAAGAAGGATCGGGTTCTGAAAAGGTGGAATACGACGGGGCACTCGGTGGTGGAGGCAGGAGAGTGTGTGGATAGGTATACGCTGAGATTGCCGGAGGATGTGAGGAGGTACATCATGGTGAACCATGGGGTGATGATGATGCAGCGTTCTGCCAGCTACAACGCGGCGGATGGTTCCAAGAAAGGCTTGTGTTGGAGTGATACGGAAGGAGGTAGGAAGAACAACGGCTCTAACAGAGGCAAGCCCAGAATATGGAACAATCAAGCCTAG 933 0.537 MEAHSENAISISVYRITERTMHQHANATQAQSPVQPVQPLSSNEHTWDPSVAFVIGSILGSFFFVAAFLTFLRRCAELLLAQQQSNNTTQLPCSCCNTGINPDILETFPIVFYSSIKDLRIRAEGPLECAVCLTEFTGNDTLRLLPHCNHVFHPPCIDAWLSSHVTCPVCRANLNQDPSQVAVSVTTQLSSGGEEHEEEGSGNRAEEENVGGESIIIEGQWKKDRVLKRWNTTGHSVVEAGECVDRYTLRLPEDVRRYIMVNHGVMMMQRSASYNAADGSKKGLCWSDTEGGRKNNGSNRGKPRIWNNQA 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90633g00025 310 CDD RING-H2_EL5-like 128 171 - -
Stsc90633g00025 310 ProSiteProfiles Zinc finger RING-type profile. 129 171 IPR001841 -
Stsc90633g00025 310 MobiDBLite consensus disorder prediction 192 206 - -
Stsc90633g00025 310 MobiDBLite consensus disorder prediction 287 310 - -
Stsc90633g00025 310 SUPERFAMILY RING/U-box 120 182 - -
Stsc90633g00025 310 SMART ring_2 129 170 IPR001841 -
Stsc90633g00025 310 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 118 187 IPR013083 -
Stsc90633g00025 310 MobiDBLite consensus disorder prediction 187 212 - -
Stsc90633g00025 310 FunFam E3 ubiquitin-protein ligase ATL6 86 177 - -
Stsc90633g00025 310 Pfam Ring finger domain 128 171 IPR001841 -
Stsc90633g00025 310 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 25 267 - -
Stsc90633g00025 310 MobiDBLite consensus disorder prediction 291 310 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90633g00025 Stsc-Chr90633 194813 197019 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90633g00025 25 260 Rapid Response to Elicitors AT3G05200 37.154 3.54e-45 156
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90633g00025 K10664 - gmx:100809056 219.164