Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90633g00021 ATGGCTGCACACTACAACCTTCTCCTCTTCTTCTACCTATTCTGCGCTGCCATTGCACAACAAAACAACCAAAACCCAGACCAAATTTCATTACTTTCCTTCAAAAACAGCCTCCACAATCCCCAACTCCTCCCTTCCTGGCACCCTGCAACTCCACACTGCCACTGGCTTGGCATTACTTGCCAACTCGGCCGAGTCAACTCGCTCTCCCTCCCTTCTCGCAATCTCAGGGGTACCCTCTCTTCCTCCCTCTTCTCTCTCACCTCCCTCGCCACCCTCGACCTTGCCGACAACAACCTCTCCGGTCAACTCCCCGCCGAACTCGCCCGCTTGACTCACCTCGAGACCCTCCGACTCGGCTCCAACTCGTTTGCCGGAAAAATCCCTCCTGAGCTGGGACTCCTCACAAAGCTTCGCACCCTCGACTTCTCCGGCAATGCCCTCACCGGAGAACTTCCGGAGTCTATCGGAAACCTGACCCAGCTCGAGTTCCTCGACCTCAGCAATAATCTATTCTCAGGTTCACTACCTTTGTCTCTGTTCACAGGACCCGTATCTCTGATTTCTCTTGACATCTCCAACAACTCGTTTTCCGGCGAAATTCCGCCGGAGATCGGGAACTGGAGAAACATCACTGCACTCTATGTGGGGAACACCAGATTATCTGGGAGATTACCTAAGGAAATTGGCGCGCTTTCAAAGCTTGAAATTCTCTATTCACCTTCCTGTTCCATTGAAGGTCCATTACCTAAGGAAATGGCAAAGCTCAAGTCTTTAACAAAACTTGATCTTTCCTACAACCCCTTGAGGTGTTCAATTCCTGAGTTCATTGGGGAACTTGACAATCTCAAGATTCTTGACCTTGTTTTTTCTCAGCTCAATGGCTCCGTGCCACCTCAGCTTGGAAGATGTAGAAGCCTGAGGTCCGTCATGCTTTCTTTCAACTCACTCTCTGGTTCATTGCCTATGGAGCTCTCCCAGGTTCCAATTGTCACTTTTTCTGCTGAGAAGAATCAGCTTCATGGGCCATTGCCTTCATGGCTTGGAAACTGGACTAGTGTTAACTCTCTGTTGCTCTCTGCTAATCATTTCTCGGGTGCGATTCCGCCGGAGCTCGGCAACTGCGGCATGATGGAGCACCTCAGTTTGAGCAGCAATTTGTTGAGTGGAGAAATACCTGAGGAACTATGCAATGCTGCATCACTTCTGGAGATTGATCTTGATGACAATTTCCTATCTGGCTCCATTGATAAAATTCCCTTGATGGTGCTGGACCTAGACTCCAACAATTTCACGGGCAACATTCCTTCCAGCCTCTGGAATTCGTCAACCCTGATGGAATTCTCAGCTGCGAATAACCGTTTGGAGGGTTCGATTCCTGTTGAGATTGGCAATGCTGTTATACTAGAAAGGCTTGTTCTTAGCAATAATCAAATTTCAGGTACTATACCTAAGGAAATTGGAATGCTCACTGGCCTTTCTGTTCTTAATCTGAATGGTAACATGCTTGAAGGGAATATCCCAGTTGAGCTCGGTGATTGCATGTCTCTTACCACATTGGACCTTGGAAACAATAGACTCAATGGCTCAATTCCTGAGAAACTGGTGCAGCTGAGCCAATTGCAGTGTTTGGTTCTTTCTCACAATGATCTGTCCGGACCTATTCCCCATAAGAACTCTTCCTACTTTCGACAACTTAGCATACCGGACTTGAGCTTTGTTCAGCACCTTGGTGTGTTTGATTTGTCCCATAATAGATTGTCTGGCACGATACCTGATGAGTTGGGGGGCTGTGTGGTGGTTGTTGATCTATTGATAAGCAACAACATGCTATCTGGGAGTATTCCAAGCTCACTCTCTCGCTTGACTAATCTTACAACTTTGGATTTGTCTGGCAACTTATTGTCCGGTTCCATTCCGCCTGAGCTTGGGGATGCCCTTAAACTGCAGGGTTTATATCTGGGATACAATCAACTCTCAGGTGCAATCCCAGCAAGTTTTGGGAAATTGAGTAGTTTGGTGAAGCTAAATTTGACAGCAAATAAGCTGTCTGGTCCAATTCCAAATAGTTTCCGGAACATGAAGGAGTTGACACACTTGGACTTGAGCTCCAATGAGCTAAGTGGCGAGCTTCCATCCTCACTGTCAGCGGTGCAAAGCCTTGTTGGGGTTTATGTGCAGAGGAACCAGCTTTCGGGCCAAGTAGGGGAGCTCTTCTCAAACTCAATGACTTGGAGGATTGAGATTATGAATCTAAGTGAGAACTGCTTCAATGGGAACTTGCCGCCATCTTTGGGAAATCTTTCCTACATGACAAATTTGGATCTTCATAGAAATATGTTGACTGGAGAGATTCCTCCGGACCTCGGAAATCTGATGCAATTGGAGTATTTTGATGTTTCAAGTAACATGCTATCAGGAAAGATTCCAGAGAAGCTATGCAGCCTAGCTAATCTGAATTTCCTAGATTTGTCTCAAAACAGATTAGAAGGACCAATACCAAGAAGTGGCATTTGCCAGAACTTATCCAGAGTTAGATTTGTGGGGAACAAAGATCTTTGTGGGCAAATGCTTGGTATTAATTGTCAGATGAAAAGCATTTGCAGGTCCGCATTTTGCAATGCATGGAGGGTAGCTGCAATTGCCATTACAGTCTTACTGATAACTCTGAGCATTGGTTTTGTTCTATATAAATGGTTTAGCAGGAGGCAAAGTGATCCTGAGGAACTAGAGGAGCGCAAACTGAACAGCTATGTGGATCAAAATCTTTATTTCTTAAGCAGTAGCAGATCAAAAGAACCTCTGAGTATCAACGTGGCAATGTTTGAACAACCTCTTCTGAAATTAACCTTGGCTGATATCCTCGATGCTACTGACAACTTCAGCAAGGCAAACATAATTGGAGATGGAGGTTTTGGAACTGTGTACAAGGCCACTTTACCTAACGGAAACACAGTTGCTGTGAAGAAGCTCAGCGAAGCTAAAACGCAGGGTCATCGCGAGTTCATGGCGGAGATGGAAACCTTGGGCAAGAAACGGTACAAGATTGCAACAGGTGCAGCTCGTGGACTAGCTTTCCTTCATCATGGTTTCATACCCCACATCATCCACAGGGATGTTAAAGCAAGCAACATTCTTCTGAATGAGGAATTCGAGCCAAAAGTGGCAGACTTTGGACTTGCAAGACTGATCAGTGCTTGTGAGACTCATATCACGACTGATATTGCCGGAACATTTGGTTACATCCCGCCGGAGTATGGACAGAGTGGGAGGTCCACAACAAGAGGAGATGTGTACAGTTTTGGTGTGATTTTGCTGGAATTGGTGACCGGAAAAGAGCCCACGGGACCTGATTTCAAAGAGATTGAAGGTGGGAATTTGGTTGGATGGGTTATTCAGAAGATCAAGAAGGGTGAGGCTTCTGATGTTCTTGATCCAACAGTTCTTGATGCTGATTCAAAGGCGACGATGCTTCAGATGCTGCAGATTGCTTGTGTATGCCTCTCTGATAACCCTGTGAACCGGCCTACAATGCTTCAAGTGCACAAGTTCCTCAAGGGATTAGGGGAGACTAGTTGA 3579 0.4619 MAAHYNLLLFFYLFCAAIAQQNNQNPDQISLLSFKNSLHNPQLLPSWHPATPHCHWLGITCQLGRVNSLSLPSRNLRGTLSSSLFSLTSLATLDLADNNLSGQLPAELARLTHLETLRLGSNSFAGKIPPELGLLTKLRTLDFSGNALTGELPESIGNLTQLEFLDLSNNLFSGSLPLSLFTGPVSLISLDISNNSFSGEIPPEIGNWRNITALYVGNTRLSGRLPKEIGALSKLEILYSPSCSIEGPLPKEMAKLKSLTKLDLSYNPLRCSIPEFIGELDNLKILDLVFSQLNGSVPPQLGRCRSLRSVMLSFNSLSGSLPMELSQVPIVTFSAEKNQLHGPLPSWLGNWTSVNSLLLSANHFSGAIPPELGNCGMMEHLSLSSNLLSGEIPEELCNAASLLEIDLDDNFLSGSIDKIPLMVLDLDSNNFTGNIPSSLWNSSTLMEFSAANNRLEGSIPVEIGNAVILERLVLSNNQISGTIPKEIGMLTGLSVLNLNGNMLEGNIPVELGDCMSLTTLDLGNNRLNGSIPEKLVQLSQLQCLVLSHNDLSGPIPHKNSSYFRQLSIPDLSFVQHLGVFDLSHNRLSGTIPDELGGCVVVVDLLISNNMLSGSIPSSLSRLTNLTTLDLSGNLLSGSIPPELGDALKLQGLYLGYNQLSGAIPASFGKLSSLVKLNLTANKLSGPIPNSFRNMKELTHLDLSSNELSGELPSSLSAVQSLVGVYVQRNQLSGQVGELFSNSMTWRIEIMNLSENCFNGNLPPSLGNLSYMTNLDLHRNMLTGEIPPDLGNLMQLEYFDVSSNMLSGKIPEKLCSLANLNFLDLSQNRLEGPIPRSGICQNLSRVRFVGNKDLCGQMLGINCQMKSICRSAFCNAWRVAAIAITVLLITLSIGFVLYKWFSRRQSDPEELEERKLNSYVDQNLYFLSSSRSKEPLSINVAMFEQPLLKLTLADILDATDNFSKANIIGDGGFGTVYKATLPNGNTVAVKKLSEAKTQGHREFMAEMETLGKKRYKIATGAARGLAFLHHGFIPHIIHRDVKASNILLNEEFEPKVADFGLARLISACETHITTDIAGTFGYIPPEYGQSGRSTTRGDVYSFGVILLELVTGKEPTGPDFKEIEGGNLVGWVIQKIKKGEASDVLDPTVLDADSKATMLQMLQIACVCLSDNPVNRPTMLQVHKFLKGLGETS 1192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90633g00021 1192 SUPERFAMILY L domain-like 563 855 - -
Stsc90633g00021 1192 Gene3D Phosphorylase Kinase; domain 1 923 1011 - -
Stsc90633g00021 1192 Pfam Leucine rich repeat N-terminal domain 25 61 IPR013210 -
Stsc90633g00021 1192 SMART LRR_typ_2 159 183 IPR003591 -
Stsc90633g00021 1192 SMART LRR_typ_2 622 646 IPR003591 -
Stsc90633g00021 1192 SMART LRR_typ_2 670 693 IPR003591 -
Stsc90633g00021 1192 SMART LRR_typ_2 135 158 IPR003591 -
Stsc90633g00021 1192 SMART LRR_typ_2 816 841 IPR003591 -
Stsc90633g00021 1192 SMART LRR_typ_2 490 514 IPR003591 -
Stsc90633g00021 1192 SMART LRR_typ_2 516 538 IPR003591 -
Stsc90633g00021 1192 SMART LRR_typ_2 256 280 IPR003591 -
Stsc90633g00021 1192 SMART LRR_typ_2 768 792 IPR003591 -
Stsc90633g00021 1192 SMART LRR_typ_2 694 718 IPR003591 -
Stsc90633g00021 1192 SMART LRR_typ_2 574 598 IPR003591 -
Stsc90633g00021 1192 SMART LRR_typ_2 87 111 IPR003591 -
Stsc90633g00021 1192 ProSiteProfiles Leucine-rich repeat profile. 258 280 IPR001611 GO:0005515
Stsc90633g00021 1192 Pfam Protein kinase domain 1015 1182 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90633g00021 1192 Gene3D Transferase(Phosphotransferase) domain 1 1012 1191 - -
Stsc90633g00021 1192 Pfam Leucine Rich repeat 514 529 IPR001611 GO:0005515
Stsc90633g00021 1192 Pfam Leucine Rich repeat 623 637 IPR001611 GO:0005515
Stsc90633g00021 1192 PRINTS Leucine-rich repeat signature 697 710 - -
Stsc90633g00021 1192 PRINTS Leucine-rich repeat signature 816 829 - -
Stsc90633g00021 1192 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1035 1047 IPR008271 GO:0004672|GO:0006468
Stsc90633g00021 1192 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 573 866 - -
Stsc90633g00021 1192 SMART serkin_6 961 1185 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90633g00021 1192 FunFam Leucine-rich repeat receptor-like protein kinase TDR 330 572 - -
Stsc90633g00021 1192 Gene3D Ribonuclease Inhibitor 421 563 IPR032675 -
Stsc90633g00021 1192 ProSiteProfiles Protein kinase domain profile. 884 1185 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90633g00021 1192 SUPERFAMILY Protein kinase-like (PK-like) 942 1185 IPR011009 -
Stsc90633g00021 1192 Gene3D Ribonuclease Inhibitor 24 183 IPR032675 -
Stsc90633g00021 1192 Gene3D Ribonuclease Inhibitor 564 865 IPR032675 -
Stsc90633g00021 1192 Gene3D Ribonuclease Inhibitor 184 420 IPR032675 -
Stsc90633g00021 1192 FunFam leucine-rich repeat receptor protein kinase EMS1 182 329 - -
Stsc90633g00021 1192 FunFam Leucine-rich repeat receptor-like protein kinase 997 1192 - -
Stsc90633g00021 1192 FunFam LRR receptor-like serine/threonine-protein kinase FLS2 24 177 - -
Stsc90633g00021 1192 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 693 1183 - -
Stsc90633g00021 1192 SUPERFAMILY RNI-like 68 327 - -
Stsc90633g00021 1192 SUPERFAMILY L domain-like 337 556 - -
Stsc90633g00021 1192 ProSitePatterns Protein kinases ATP-binding region signature. 967 990 IPR017441 GO:0005524
Stsc90633g00021 1192 Pfam Leucine rich repeat 648 707 IPR001611 GO:0005515
Stsc90633g00021 1192 Pfam Leucine rich repeat 113 171 IPR001611 GO:0005515
Stsc90633g00021 1192 SMART LRR_sd22_2 694 717 - -
Stsc90633g00021 1192 SMART LRR_sd22_2 792 818 - -
Stsc90633g00021 1192 SMART LRR_sd22_2 622 637 - -
Stsc90633g00021 1192 SMART LRR_sd22_2 135 161 - -
Stsc90633g00021 1192 SMART LRR_sd22_2 256 282 - -
Stsc90633g00021 1192 SMART LRR_sd22_2 514 540 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90633g00021 Stsc-Chr90633 161781 165568 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90633g00021 27 1186 Receptor kinase-like Gene Family AT5G07280 55.797 0.0 1289
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Stsc90633g00021 Pkinase 3.2e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90633g00021 - - aip:107618864 2187.92