Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90633g00015 ATGGATGGTCATGGTGATATGGGTCTCATAGGGGAAAATTTTGACACCAGTTTGATTGGGAGGTTGAGAGATGATGACTACGAGAGCAGGTCGGGAAGCGATAATTTTGAAGGCGCCTCCGGTGATGATCAGGATGCTGGGGCTGACCAGCCACGGAGGAAGAAGAGATACCATAGACATACTCCTCACCAAATTCAAGAGCTTGAGACTTTCTTCAAAGAGTGTCCTCATCCTGATGAGAAGCAAAGGTTGGATCTTAGTAAGAGGCTTGGCTTGGAGAATAAGCAAGTCAAATTCTGGTTTCAGAATAGGAGAACCCAAATGAAGACCCAATTGGAACGGCATGAGAACATAATGCTTAGACAGGAGAATGAAAAGCTGAGAGCTGAGAATAGTTTGATGAAGGAAGCCATGTCAAACCCAGTGTGTAACAATTGTGGTGGGCCAGCCATTCCTGGGCAAATTTCATTCGAGGAGCACCAGATTAGAATTGAAAATGCTCGTCTGAGGGATGAATTGAACCGCATATGTGCCTTGGCGAACAAGTTCCTTGGCAAGCCAATCTCATCCCTGACCAATCCTATGGCTATCCCAACCTCAAATTCTGGTCTAGAACTGGGTATTGGAAGGAATGGGATTGGTGTTTCAAGCCCCTTTGGAACTCCCTTGCAGATGGGACTTGATTTAGGAGATGGAGTATTGGGAACTCAAGCAGCAATGCCTGGGATGAAGTCACCATTGGGATTGATGGGAAATGATGTTCAACTTGAGAGATCTATGCTTGTAGATGTTGCACTGGCTGCCATGGATGAATTGATTAAGATGGCTCAGGCAGATAGCCCTCTTTGGATTAAGGGCTTTGATGGTGAGAGGGAGGTACTGAATCACGAAGAGTATGGAAGGACCTTCAATCCTTGTATTGGTCCCAAACCTGCTGGTTATGTAACTGAAGCTACAAGAGAAACTGGGATAGTTATCATCAACAGTTTGGCCCTTGTGGAAACTTTGATGGATGCGAATCGATGGTTGGAGATGTTTCCATCAATGATTGCTAGAGCTGTGACCCTTGATGTTATATCTAATGGCATGGGTGGAACCAGAAATGGTGCTTTGCAACTGATGCATTCGGAGATTCAATTGCTTTCACCACTAGTCCCTATTCGTCAAGTGAAGTTCCTCAGGTTCTGTAAGCAGCATGCGGAAGGTGTATGGGCTGTAGTTGATGTTTCTGTTGAGATCGGTCGCGACGCCTCGAATGCACACCCATTCATGAGCTGCCGTAGGCTTCCTTCTGGCTGTGTTGTGCATGATATGCCCAATGGCTACTCCAAGGTTACTTGGGTTGAACATTGGCAGTATGATGAAAGTGTGGTGCACCAACTGTATCGGCCACTGATGAATTCTGGGTTTGGATTTGGTGCTCATAGATGGATAGCCACTCTCCAGAGGCAATGTGAATGCTTGGCAATCCTCATGTCCTCATCCATCTCAACCGACGATCACACAGCATTAAGCCAAGCCGGTAGGAGAAGCATGTTGAAGCTGGCACAGCGCATGACGAGCAACTTCTGTTCCGGCGTGTGTGCGTCGTCGGCACGCAAGTGGGACAGCCTTCACATTGGGAGCTTGGGTGATGATATGAGAGTGATGACGAGGAAGAATGTGGATGACCCAGGTGAGCCTCCAGGCATCGTCCTCAGTGCTGCCACTTGTGTTTGGATGCCCGTCTCACGCCAAAGGCTCTTCGAGTTTCTGCGCGACGAACGCCTTCGGAGCGAGTGGGACATTCTGTCGAATGGTGGACCTATGCAGGAGATGGTCCACATTGCTAAAGGGCAAGGACATGCAAATTGTGTTTCTCTCTTGCGTGCTAATGGTGTCAATAATAATGCCAATGAGAGCAGCATGGTGATTCTTCAAGAGACATGGACAGATGCATCGTGCTCCGTTGTAGTATATGCACCGGTGGATGTGCCGTCGTTGAACGTGGTCATGAGCGGTGGTGATTCTGCATATGTAGCGCTGTTGCCATCGGGTTTTGCTATTCTCCCCGACGGTCATTCGACGTCGGGGTCTAACGGGAACGCAGGCAGCAAGGGTGGTGGTGGCGATGATGGAGGTGGATGCTTGCTGACGGTTGGTTTCCAGATCTTGGTGAATAGCCTGCCAACAGCGAAGCTGACAGTGGAGTCGGTGGATACTGTGAATAACTTGATATCATGCACCATTCACAAGATCAAAGCTGCACTCACACTTTCTTCATAA 2265 0.483 MDGHGDMGLIGENFDTSLIGRLRDDDYESRSGSDNFEGASGDDQDAGADQPRRKKRYHRHTPHQIQELETFFKECPHPDEKQRLDLSKRLGLENKQVKFWFQNRRTQMKTQLERHENIMLRQENEKLRAENSLMKEAMSNPVCNNCGGPAIPGQISFEEHQIRIENARLRDELNRICALANKFLGKPISSLTNPMAIPTSNSGLELGIGRNGIGVSSPFGTPLQMGLDLGDGVLGTQAAMPGMKSPLGLMGNDVQLERSMLVDVALAAMDELIKMAQADSPLWIKGFDGEREVLNHEEYGRTFNPCIGPKPAGYVTEATRETGIVIINSLALVETLMDANRWLEMFPSMIARAVTLDVISNGMGGTRNGALQLMHSEIQLLSPLVPIRQVKFLRFCKQHAEGVWAVVDVSVEIGRDASNAHPFMSCRRLPSGCVVHDMPNGYSKVTWVEHWQYDESVVHQLYRPLMNSGFGFGAHRWIATLQRQCECLAILMSSSISTDDHTALSQAGRRSMLKLAQRMTSNFCSGVCASSARKWDSLHIGSLGDDMRVMTRKNVDDPGEPPGIVLSAATCVWMPVSRQRLFEFLRDERLRSEWDILSNGGPMQEMVHIAKGQGHANCVSLLRANGVNNNANESSMVILQETWTDASCSVVVYAPVDVPSLNVVMSGGDSAYVALLPSGFAILPDGHSTSGSNGNAGSKGGGGDDGGGCLLTVGFQILVNSLPTAKLTVESVDTVNNLISCTIHKIKAALTLSS 754
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90633g00015 754 ProSiteProfiles START domain profile. 254 490 IPR002913 GO:0008289
Stsc90633g00015 754 Pfam START domain 264 487 IPR002913 GO:0008289
Stsc90633g00015 754 SUPERFAMILY Bet v1-like 255 487 - -
Stsc90633g00015 754 Coils Coil 105 140 - -
Stsc90633g00015 754 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 50 750 IPR042160 -
Stsc90633g00015 754 SUPERFAMILY Homeodomain-like 40 111 IPR009057 -
Stsc90633g00015 754 FunFam Homeobox-leucine zipper protein HDG1 40 127 - -
Stsc90633g00015 754 CDD START_ArGLABRA2_like 258 486 - -
Stsc90633g00015 754 Gene3D - 41 127 - -
Stsc90633g00015 754 SMART HOX_1 52 115 IPR001356 GO:0003677
Stsc90633g00015 754 ProSiteProfiles 'Homeobox' domain profile. 51 111 IPR001356 GO:0003677
Stsc90633g00015 754 Pfam Homeodomain 54 109 IPR001356 GO:0003677
Stsc90633g00015 754 MobiDBLite consensus disorder prediction 21 63 - -
Stsc90633g00015 754 SMART START_1 263 487 IPR002913 GO:0008289
Stsc90633g00015 754 FunFam Homeobox-leucine zipper protein GLABRA 2 263 486 - -
Stsc90633g00015 754 ProSitePatterns 'Homeobox' domain signature. 86 109 IPR017970 GO:0000981|GO:0006355
Stsc90633g00015 754 SUPERFAMILY Bet v1-like 515 747 - -
Stsc90633g00015 754 CDD homeodomain 53 111 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90633g00015 Stsc-Chr90633 138862 142618 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90633g00015 1 750 Homeobox Transcription Factor Family AT3G61150 60.526 0.0 920
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Stsc90633g00015 START 4.4e-49 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90633g00015 K09338 - gmx:100794400 1312.36